Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55370 230 / 9e-73 NDF5 NDH-dependent cyclic electron flow 5 (.1.2) AT1G64770 91 / 2e-20 PnsB2, NDH45, NDF2 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) AT4G23730 45 / 7e-05 Galactose mutarotase-like superfamily protein (.1) AT4G25900 44 / 0.0001 Galactose mutarotase-like superfamily protein (.1) AT3G61610 42 / 0.0003 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002626 [exp] 585 / 0 AT1G55370 234 / 4e-74 NDH-dependent cyclic electron flow 5 (.1.2) Lus10010671 [exp] 99 / 7e-23 AT1G64770 413 / 1e-144 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Lus10007429 [exp] 97 / 3e-22 AT1G64770 408 / 2e-142 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Lus10003035 [exp] 45 / 4e-05 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10005147 [exp] 45 / 4e-05 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 44 / 0.0002 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 43 / 0.0003 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 42 / 0.0004 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034000 [exp] 312 / 3e-104 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2) Potri.019G034100 [exp] 119 / 1e-30 AT1G64770 417 / 3e-146 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Potri.002G167200 [exp] 44 / 0.0001 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 43 / 0.0002 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020267 pacid=23144093 polypeptide=Lus10020267 locus=Lus10020267.g ID=Lus10020267.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCTCTTTCTTCTCCACATTCAAAACCCTCAATATTCCCACTTTCCCTTCTTCTTCTTCTTCAACCTTTCTTCTTTACCAGAGAAGAACTA CCATATCCTACGTGGCATTCCGGAACCAGGCAATCAACGTGGACTATTTAGAACAAGAATTCGGCGGCCATGGAGTCAAGTTCCAGACTTTGGAGGAAGA GACCTGCTGCGTGGGGAAAATGAAGATGAGCAATGGAAGCTCCGCAACTTTCCTGCTCCCACACGGTCTGATCACTTCCTACAAGGCAATGATGTGGCAT GGCGGGACCATGGAGCTGATTCAGACCTCCGTCGACGACGGCGGCGGCGGCGGTGGAGATGATGTTAGTGGTGGCGCTGTGATCCAAGGTGGAGTTTCTT TGGCCGTTGAGTTGGGTGCGGTGAGCGGCGGCCATGGCGGCGGATACGGTGGTTTGAGTGATTGGGTTGTTGCTGATATTCGAGGTGATCCTACTGACTG CATTGAGGTTGAACTGGTATGTACCAGTACAGCAAACCAAATGGTTGATGCCAGATGCACAATAACCATGGAACCAGACATGTTGAGTTCAGAACTCCAG CTCACAAACCTAAACAAATCACCTTCAATCCAAATCACAGGCTTCATTCTAACCCATCTGACGGTGAGCACGCCTGAAGCAACGGCCGCCTGTGGACTCG AAGGCTCTAGTTTCGTCGCGAGGCCAATGCTCCGGTCCAGATTCGCGATCGTGCCTCCGGATACTGGAGACGATCGCGACATGTTTGGGAACAGAACTTA TCTGAAAGTAGTGACTGAAGAAGAAGGAACGGAAGGTGAAGAGTGTGATAGCTATAAGGTGCTGACTGATGAATTGTGCAGGGTTTATACCAGTTCTGCT AGGAACTTTACGCTCCTCGACCGGGGAAGAAGGAACTCAGTGGTAGTTGGAAGAAAAGGATTTGAAGAACTGTATATCTACAGTCCAGGATCAATCCATG AGAGCCATGGCAAGTATTCTTACATAGGAATTGCCCAATCTGCCTTGGTAAAGCCTCTTGTTCTTGGTCCTGGACAACAATGGAGTGGCAAGCAACATCT CCATAACCCTAATCTGTGA
AA sequence Show only first row Show all	>Lus10020267 pacid=23144093 polypeptide=Lus10020267 locus=Lus10020267.g ID=Lus10020267.BGIv1.0 annot-version=v1.0 MAATSFFSTFKTLNIPTFPSSSSSTFLLYQRRTTISYVAFRNQAINVDYLEQEFGGHGVKFQTLEEETCCVGKMKMSNGSSATFLLPHGLITSYKAMMWH GGTMELIQTSVDDGGGGGGDDVSGGAVIQGGVSLAVELGAVSGGHGGGYGGLSDWVVADIRGDPTDCIEVELVCTSTANQMVDARCTITMEPDMLSSELQ LTNLNKSPSIQITGFILTHLTVSTPEATAACGLEGSSFVARPMLRSRFAIVPPDTGDDRDMFGNRTYLKVVTEEEGTEGEECDSYKVLTDELCRVYTSSA RNFTLLDRGRRNSVVVGRKGFEELYIYSPGSIHESHGKYSYIGIAQSALVKPLVLGPGQQWSGKQHLHNPNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10020267 [exp]	0	1
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	3.2	0.8895
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	4.0	0.8853
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10021081 [exp]	4.9	0.8681
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10019954 [exp]	4.9	0.8863
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	5.0	0.8948
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021303 [exp]	5.1	0.8676
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10041654 [exp]	5.5	0.8787
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	10.5	0.8683
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	11.6	0.8799
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	12.7	0.8705

Compare expression of checked genes

Lus10020267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.