Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13460 426 / 6e-140 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT1G55500 397 / 9e-130 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT3G03950 356 / 3e-116 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3) AT5G61020 347 / 7e-112 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT3G13060 323 / 5e-101 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT3G17330 278 / 2e-85 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT1G48110 278 / 6e-84 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT1G79270 272 / 7e-83 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT1G27960 269 / 2e-81 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT5G58190 256 / 6e-77 ECT10 evolutionarily conserved C-terminal region 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002624 [exp] 1103 / 0 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10033335 [exp] 318 / 7e-99 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10034792 [exp] 309 / 1e-95 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037028 [exp] 281 / 2e-85 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10027582 [exp] 280 / 1e-84 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10015778 [exp] 267 / 4e-83 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037364 [exp] 270 / 2e-81 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10017111 [exp] 272 / 5e-81 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10035790 [exp] 273 / 1e-78 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034300 [exp] 474 / 1e-160 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.001G002000 [exp] 410 / 1e-134 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.003G222700 [exp] 402 / 2e-131 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.007G002800 [exp] 325 / 2e-101 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.014G001000 [exp] 320 / 1e-99 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 295 / 1e-90 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.008G100200 [exp] 294 / 5e-89 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.010G175500 [exp] 289 / 2e-88 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.008G080800 [exp] 285 / 7e-87 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.018G149800 [exp] 283 / 1e-85 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain CL0178 [flax] [poplar] PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10020269 pacid=23144158 polypeptide=Lus10020269 locus=Lus10020269.g ID=Lus10020269.BGIv1.0 annot-version=v1.0 ATGGCGGTCGTCGCTTCCGGCTCTGATCGTATCCTTTCCGAATTCCCCGAGCTCGAGACTGCAGGCTTATTGGAGAACCTGTCGCTGGACGGTCAGGCGA AGGCAGCTGCTGATGGCATGGAGACTGCAAAGAAGCTCACAACTAGTCAATATGGAACGAATGATTTGGCTAATAATAATCAAGGGATGTCGTTAACCCG CTCTACGACCCCTCTTGTTGACCCAAACGCGCAGAACTATTTCCCTAATGGATACCCACCATCACCTGCGTACTATTACGGAGGTTATTTTGGGCATGGT AATGAGTGGAACGACTACAGTAGAGGGCTTGAGATGTCTCATGGTGGTTTTGGTGAAGGAGATGCGGCAGGGTTTCATCCCCAAGGTTATCCTTTGTATT CCCCGACAAATGGTTCAGGTCAAACGAATGACAGTCAGTTGTATGGGACACAGCAGTACCAGTATCCGTTCTATCAGCTCCCTAACTCAAACTCAAATGG CTCTCTTAACCAAGTGAGCCCTTCGCCGGGGCAGGCTGCAACTGCAGGCTTGGCTGAGAAAGGATCTCTGCCTGCTGGAACTACCCCCGGGAATATGGGG AGTTTGAACAAGAATAATGGATTGAAGTCATTCAGACCAAGCAATCAGAATTCATACTCGAACACCAATGGTGCCTCCAAAAGGGGAAGTTCTGGGACGA CGTACCAGCCGTCAAGTTATCAGGATCCAAGATTTTCGTACGATGGATTTCAATCAACATTCCCGTGGGTTGATGCTTCCATGTATTCCTCTTCGCTGAA TTCACATCAAACAAGGCCTGTACCTAGTTATGGACAGGGTTCTGGTTATATGATGTACCCGAACAACAGAATGTATGACCATTATGGTAACAGAGGCAGC GGATATTCTTTCGGGTATAACAACAGTTGGACTAATGGACGCGGATGGATGACTGTTGACAAGTACAAATCAAAAGGCCGTGGCTATGGAAATGAGAACA TGGACGGCTCAGGCGAGCTTAACAAAGGCCCCAGGGCCAAGAGTTTTAAGCTTCAGAAAGATCTCAGTGCTGAAACTACGCTGGAGGGGCAGAACGATTC TTCGACAGAGAACAAGGAGGAGAATCCGACTGAAATTCTTGACCAGGGACAGTACAATAGGGACGATTTCCCAGAAGATTATGCGGATGCCAAATTCTTT GTGATAAAATCATACAGTGAGGATGATGTCCATAAGAGCATCAAATATGGTGTTTGGACTAGCACTTCGAATGGTAATAAGAAGCTCGATGCAGCTTACA GAGAGTCAAGTGCAAAGGCTGCTCAATGCCCTGTATTTTTATTGTTCTCAGTGAACACTAGTGGTCAATTTGTTGGTTTGGCTGAAATGGTCGGACCGGT GGATTTCGATAAAACTGTCGAGTACTGGCAGCAAGACAAGTGGACCGGCTGCTTCGCTGTCAAGTGGCATATCATCAAGGATGTGCCGAACAGCACATTG AGGCACATCACCCTCGAGAACAACGAAAACAAGCCTGTGACTAATAGTAGGGATACTCAAGAGGTTCACATTGAGAAGGGCATTGAGGTTCTCAAAATCT TCAAGTCCTGCAAATCCAAGACTTCCATACTGAACGACTTTGGATTCTACGCTACCCGCGAAAAGATCATGCAGGAGAAGAGGGCCAAGCAAAAGATGCA GAAGCAGGTTCTGGAAAATGCAATGATGGGGAAGGAACAAGATCCAACAAGGACATCAGCAGCAGCAGCAGCAGCTGGAGAAGTCGAGCAGAAGATCAAC GGCGAGGCTAGGCTGCCGGAACAGAACGAATCGGCCGTCGCTCCATACGGTGTACAGTCGATGCTGAAGGAAGGACACAAGCATCTCTCCGGCCTCGACG AAGCTGTCCTCAAGAATATTGACGCCTGCAAGCAGCTGTCCACCATCACCCGTACTTCTCTCGGACTTAACGGTATGAATAAGATGGTGATAAATCATCT GGACAAGCTGTTTGTCACTAACGATGCAGCAACCATAGTGAACCAGCTTGAAGTACAGCACCCTGCAGCGAAGATTCTGGTATTGGCTGGGAAAGCTCAG CAGGAGGAGATCGGGGATAGAGCTAAGGGATGGAGCTAA
AA sequence Show only first row Show all	>Lus10020269 pacid=23144158 polypeptide=Lus10020269 locus=Lus10020269.g ID=Lus10020269.BGIv1.0 annot-version=v1.0 MAVVASGSDRILSEFPELETAGLLENLSLDGQAKAAADGMETAKKLTTSQYGTNDLANNNQGMSLTRSTTPLVDPNAQNYFPNGYPPSPAYYYGGYFGHG NEWNDYSRGLEMSHGGFGEGDAAGFHPQGYPLYSPTNGSGQTNDSQLYGTQQYQYPFYQLPNSNSNGSLNQVSPSPGQAATAGLAEKGSLPAGTTPGNMG SLNKNNGLKSFRPSNQNSYSNTNGASKRGSSGTTYQPSSYQDPRFSYDGFQSTFPWVDASMYSSSLNSHQTRPVPSYGQGSGYMMYPNNRMYDHYGNRGS GYSFGYNNSWTNGRGWMTVDKYKSKGRGYGNENMDGSGELNKGPRAKSFKLQKDLSAETTLEGQNDSSTENKEENPTEILDQGQYNRDDFPEDYADAKFF VIKSYSEDDVHKSIKYGVWTSTSNGNKKLDAAYRESSAKAAQCPVFLLFSVNTSGQFVGLAEMVGPVDFDKTVEYWQQDKWTGCFAVKWHIIKDVPNSTL RHITLENNENKPVTNSRDTQEVHIEKGIEVLKIFKSCKSKTSILNDFGFYATREKIMQEKRAKQKMQKQVLENAMMGKEQDPTRTSAAAAAAGEVEQKIN GEARLPEQNESAVAPYGVQSMLKEGHKHLSGLDEAVLKNIDACKQLSTITRTSLGLNGMNKMVINHLDKLFVTNDAATIVNQLEVQHPAAKILVLAGKAQ QEEIGDRAKGWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10020269 [exp]	0	1
AT3G01160			unknown protein		Lus10041866 [exp]	2.4	0.8425
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015201 [exp]	2.6	0.8258
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	3.3	0.8643
AT1G13160			ARM repeat superfamily protein...		Lus10036950 [exp]	4.5	0.8516
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	6.9	0.8130
AT1G10840		TIF3H1	translation initiation factor ...		Lus10007054 [exp]	7.3	0.7965
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	8.2	0.8375
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	11.5	0.8151
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10028007 [exp]	13.0	0.8158
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	15.5	0.8202

Compare expression of checked genes

Lus10020269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.