Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55000 338 / 2e-113 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) AT3G03773 160 / 6e-47 HSP20-like chaperones superfamily protein (.1.2) AT4G02450 98 / 6e-23 HSP20-like chaperones superfamily protein (.1.2) AT3G09030 44 / 0.0003 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002622 [exp] 452 / 8e-158 AT5G55000 462 / 1e-165 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10002623 [exp] 250 / 2e-81 AT3G03773 165 / 2e-53 HSP20-like chaperones superfamily protein (.1.2) Lus10010669 [exp] 184 / 2e-55 AT3G03773 223 / 6e-76 HSP20-like chaperones superfamily protein (.1.2) Lus10024119 [exp] 106 / 4e-27 AT3G03773 121 / 2e-36 HSP20-like chaperones superfamily protein (.1.2) Lus10026136 [exp] 106 / 1e-25 AT4G02450 122 / 1e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10000340 [exp] 106 / 2e-25 AT4G02450 120 / 5e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10008680 [exp] 108 / 3e-25 AT5G04940 216 / 8e-64 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G038400 [exp] 384 / 2e-131 AT5G55000 414 / 1e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.013G062500 [exp] 367 / 1e-124 AT5G55000 413 / 2e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.013G062600 [exp] 177 / 6e-53 AT3G03773 191 / 3e-63 HSP20-like chaperones superfamily protein (.1.2) Potri.019G038550 [exp] 169 / 3e-50 AT3G03773 197 / 5e-66 HSP20-like chaperones superfamily protein (.1.2) Potri.002G061500 [exp] 105 / 4e-26 AT4G02450 123 / 4e-35 HSP20-like chaperones superfamily protein (.1.2) Potri.005G199700 [exp] 103 / 2e-25 AT4G02450 127 / 9e-37 HSP20-like chaperones superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain CL0505 [flax] [poplar] Pentapeptide PF00805 [flax] [poplar] Pentapeptide Pentapeptide repeats (8 copies) CL0033 [flax] [poplar] POZ PF02214 [flax] [poplar] BTB_2 BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10020270 pacid=23144078 polypeptide=Lus10020270 locus=Lus10020270.g ID=Lus10020270.BGIv1.0 annot-version=v1.0 ATGGCGACGAGTTTTCTTCAACCTCCGGCCACAGCTCCGGCATCCGATAACAGCCACGAAACAAGCCGGAATCCAGAAGTCCTCTGGGCTCAGAAATCCG GGAAGGTGTACTTAACGATCGCCCTGCCGGACGCCAAGGACGTAGCGGTGAAATGTGAGTCCGAGGGCTTGTTCGCCTTCTCCGCTCGCGGGATTAATGG CGAGTCCTTCGAGCTCAGTTTGCATCTCTACGCTCCGATTCTCCCCGAGACTTGTAAGGCGAATGCTGGATTGAGGAACATAATCTGCTCGATTCGGAAA GCGGAGAAGAAATGGTGGAAGAGGCTGTTGAAGACTGGTGAGAAGCCTGCACCTTACATTAAGGTTGATTGGAACAAGTGGATCGATGAGGATGATGAGG ATTCAGCTTCTGCCTCAGGCATCCTTAACTGGGGTGGATGTCGCTTGCTCAGTGGCCTGTCAAACATGTTTTACAACTTCCACTCTGCAGGTGACTTCGA CTCAGACGAAGATAACCCAACGAATGACGATGATGCTGAAACCAGCGATGAAGAAGGACTGCTCTGTGGAAAGAAATTCTCCACTACTGTGGACACTCTG ACGAACCGGGAGCCGCAGTCGATGCTTTACGCGATGTTCAGTGGCCGGCATACTGTGTGTGAGGATCCTGTCTCGGGAGGCGTCTTTGTGGATAGGGATG GGAAGCATTTCAGGCATGTTCTGAACTGGTTGAGGGACGGAGTAGTTCCAAATCTGACCGATGCTCAGTATTCGGAGCTTATGCGGGAGGCTGAATACTA TCAGCTACTTGAGCTTATAGAGGCGATCAATTCTGCAGTTAACCAGAGGAAGCCGGGCGATGAACTGGATACGGAATTGACTCGAACGGATATCATCAAG TGTACACAGTCTGAGAAGGTCCGGTTTCGTGGGGTTAATCTTTCTGGCCTTGATCTCTCCAAATTGGACCTATCCTTTGTTGACTTCAGTTATGCTAGTC TTCGAAATGTCTTCTTCTCGCGTGCCAATCTTCAGTGTGCTAAATTCCGGGATGTGGATGCCGAGGGTTCCATATTTCATAATGCAACCCTACGAGAATG CGAATTCACTGGTGCAAATCTTCGTGGAGCTTTATTAGCTGGTGCTAATCTTCAGAGCGCAAATATGCAAGATGCTTGTTTGGTAGATTGCAGCTTTTGT GGAGCAGATCTGCGTTCAGCTCACTTACAGACTGCCGATCTTACCAATGCCAATTTGGAGGGAGCAAACCTAGAAGGAGCTAATCTGAAGGGTGCAAAGC TGAACAACGCCAACTTAAAGGGCGCAAACCTTCAACGCGCCTATCTTCGACAAGTCAATCTCCAAAACGCCTTACTGGAATGGGTTGCTTCGCAACGAAT CGACTGTAGGCCAATCTTGCCTGAGGAGATTAAGCAACCAGCATTCGGACTAGAGGGTAAGAAAGCTCCGGGACCGGATGGATTCTTTGAGACAAATATA TATTATGCCGAGCGCAGGTGGAACGATACTCATATTGCGCTCATTCCTTTTGTTACAGGACAGAAGTATCATCTCGATCGTTACTCACTCGTTTCGAAAC CGGGATACAAGTGA
AA sequence Show only first row Show all	>Lus10020270 pacid=23144078 polypeptide=Lus10020270 locus=Lus10020270.g ID=Lus10020270.BGIv1.0 annot-version=v1.0 MATSFLQPPATAPASDNSHETSRNPEVLWAQKSGKVYLTIALPDAKDVAVKCESEGLFAFSARGINGESFELSLHLYAPILPETCKANAGLRNIICSIRK AEKKWWKRLLKTGEKPAPYIKVDWNKWIDEDDEDSASASGILNWGGCRLLSGLSNMFYNFHSAGDFDSDEDNPTNDDDAETSDEEGLLCGKKFSTTVDTL TNREPQSMLYAMFSGRHTVCEDPVSGGVFVDRDGKHFRHVLNWLRDGVVPNLTDAQYSELMREAEYYQLLELIEAINSAVNQRKPGDELDTELTRTDIIK CTQSEKVRFRGVNLSGLDLSKLDLSFVDFSYASLRNVFFSRANLQCAKFRDVDAEGSIFHNATLRECEFTGANLRGALLAGANLQSANMQDACLVDCSFC GADLRSAHLQTADLTNANLEGANLEGANLKGAKLNNANLKGANLQRAYLRQVNLQNALLEWVASQRIDCRPILPEEIKQPAFGLEGKKAPGPDGFFETNI YYAERRWNDTHIALIPFVTGQKYHLDRYSLVSKPGYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55000		FIP2	potassium channel tetramerisat...		Lus10020270 [exp]	0	1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10011329 [exp]	5.5	0.8627
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10035470 [exp]	12.9	0.8665
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	14.2	0.8669
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10033636 [exp]	18.2	0.8570
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	18.3	0.8593
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10014824 [exp]	25.5	0.8353
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	28.1	0.8616
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Lus10027093 [exp]	28.6	0.8565
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10003115 [exp]	29.3	0.8473
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	31.5	0.8567

Compare expression of checked genes

Lus10020270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.