Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	No hit found
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020271 pacid=23144207 polypeptide=Lus10020271 locus=Lus10020271.g ID=Lus10020271.BGIv1.0 annot-version=v1.0 ATGTCGGGGATCATTCACAAGATCGAGGAGACGCTACACATCGGCGGAGGAGACGATCATAAGGACAAGGACAAAGACAAGCATCACGGTCACGGTGGCG ATCATAAGCACTCATCCGGCGATCACAAGGAAGGGATCGTCGACAAGATGAAGGACAAGATACACGGCGAAGACCATCATGACCATCACGGCCATGATGG CGAGAAGAAGAAAAAGAAGAAGAAGGAGAAGAAAAAGCACGAGGACGGGCACGAGAGCAGCAGTGGTAGCGACAGCGACTGA
AA sequence Show only first row Show all	>Lus10020271 pacid=23144207 polypeptide=Lus10020271 locus=Lus10020271.g ID=Lus10020271.BGIv1.0 annot-version=v1.0 MSGIIHKIEETLHIGGGDDHKDKDKDKHHGHGGDHKHSSGDHKEGIVDKMKDKIHGEDHHDHHGHDGEKKKKKKKEKKKHEDGHESSSGSDSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54410			dehydrin family protein (.1)		Lus10020271 [exp]	0	1
AT4G02160			unknown protein		Lus10010018 [exp]	3.2	0.7780
AT1G32730			unknown protein		Lus10011037 [exp]	4.0	0.7311
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	5.1	0.7578
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041976 [exp]	14.3	0.7389
AT1G14200			RING/U-box superfamily protein...		Lus10005237 [exp]	15.3	0.7087
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Lus10034635 [exp]	16.2	0.7024
					Lus10027076 [exp]	16.9	0.7308
AT3G19300			Protein kinase superfamily pro...		Lus10034770 [exp]	17.7	0.6874
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10010458 [exp]	18.2	0.6766
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10009834 [exp]	21.8	0.7022

Compare expression of checked genes

Lus10020271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.