Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13530 98 / 4e-21 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT3G09550 86 / 2e-17 Ankyrin repeat family protein (.1) AT2G03430 81 / 5e-17 Ankyrin repeat family protein (.1) AT5G14230 78 / 7e-15 unknown protein AT1G05640 77 / 1e-14 Ankyrin repeat family protein (.1) AT3G12360 76 / 2e-14 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT4G32500 76 / 5e-14 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT3G04710 72 / 2e-13 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G14390 73 / 3e-13 Ankyrin repeat family protein (.1) AT5G53470 69 / 2e-12 ACBP1 acyl-CoA binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002621 [exp] 706 / 0 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10010667 [exp] 506 / 1e-178 AT2G03430 82 / 5e-18 Ankyrin repeat family protein (.1) Lus10007432 [exp] 280 / 8e-90 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10003748 [exp] 179 / 4e-50 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10003308 [exp] 88 / 4e-18 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10028039 [exp] 86 / 5e-18 AT3G02850 60 / 1e-17 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10024136 [exp] 86 / 2e-17 AT5G13530 2095 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10039491 [exp] 86 / 3e-17 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10036990 [exp] 85 / 4e-17 AT5G14230 510 / 5e-174 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062000 [exp] 719 / 0 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 225 / 3e-67 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.002G213200 [exp] 172 / 1e-47 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.001G333600 [exp] 98 / 4e-21 AT5G14230 975 / 0.0 unknown protein Potri.001G029600 [exp] 93 / 2e-19 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.008G048400 [exp] 84 / 6e-17 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 82 / 3e-16 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 80 / 2e-15 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 79 / 2e-15 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 79 / 4e-15 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10020272 pacid=23144105 polypeptide=Lus10020272 locus=Lus10020272.g ID=Lus10020272.BGIv1.0 annot-version=v1.0 ATGGATCGGCTCATCAAGCTCGAGCCGTCGAACGTGGCGGCGATAAGGATCGACCCGTCGGGCAAAAACTGCTCCGGCGAGCTCGTCCTCCGCAACGTCA TGTACACCATGCCCGTCGCCTTCCGGATCCAGGCCCTGAACAAGAACCGGTACTCGATCAAGCCTCAGTCCGGCGTGATCTCGCCTCTGGCGGTCCAGTC CATCGAGATCACGTACATCCTCCGGCCGGATTCCGACCTGCCTGAGAAATTCCCGCACTCCGACGACTCGTTCCTCCTGCACAGCGTCGTGGTCCCCGGC GCGGCGATCAAGGACCTCGAAGCTGTGCCGAACGAGTGGTTCACCGCTAGGAAGAAGCAGGTTTTCCAGGATAGCGGGCTGAAGGTGATGTTCGTCGGGG CGCCGGTCTTGGCCCGGATGGTTGTTGACGGCGGTGCTGTTGATGAGATCCGGGAGGTTCTTGAACGGAGCGATCCGTCGTGGAAGGCGGCGGATGCTGT GGATCACCACTGCGAGCCGCTGGTAAATATCGCGATTGCTCGCGGGAGTGGCGATTTGGGTCCGGGCGGGAGGGCAGATTTGGTTCAGCTGCTTTTGGAG TTCGGACCGGATGTCGAGTCTCGGGGACGGTCCGGGTCGACCCCGTTGGAGGTCGCGTCTGGGTCGGGCGAGTCTTTGATTTTTGAGCTTTTGTTGGCTC ATGGGGCCAGCACGGAGAGATCGAAGACTTCTTCGTGGGGCCCCATCCATCTAGCGGCAGGAGGAGGGCACGTAGATGTCCTCAGGCTCCTTTTAACTAA AGGAGCCCGTGTTGACTCGTTGACTAAAGATGGTAACACCGCACTTCATATTGCCGTGGAGCAACGACGTCGTGACTGTGCTCGGTTGTTGATTGGGGGC GGAGCGCGTGTCGACTTGCGGAACGGGAGGGACGGAGACACGCCTCTACATGTTGCGGCGAGGATCGGCGACGAGAATATGGTGAGGGTTTTGTTGTCAA AAGGAGGGGCAAATAAAGGAATTCGAAACAGAAACTGCCATACAGCTTACGATATCGCGATGGAGTACGGTCACGTCCGACTCTTCGACGCTCTGAAGCT TGGAGACAGCTTGTGTGTGGCAGCACGTAAAGGGGACGTGAGGGAGATCCAACGGTTGACAGAAGGCGGGGCGACAGTCAACGGCCGAGACCAACACGGG TGGACCGCACTCCATAGGGCAGCATTCAAGGGCAAAATCGACGCAGTACGAACGCTCCTCGAAAAAGGGATCAACATCGACTCGAAGGACGAGGACGGGT ACACAGCGCTACATTGCGCGGTGGAAGCCGGACAGGCGGACGTGATCGAGTTGTTAGTCAAGAAAAACATCGATGTGGATGCGCGCACGAACAAAGGCGT CAGCGCACTGCAAATCGCGGAGTCGCTACACTACGCGGGGATCACGAGAGTTCTAATCAACGGCGGCGCATCCAGGGAAGACGCAAACGACCATGTTAAG GATCCGACACATGTATCGTCCAAGAACGGGCTAATGTCTGCTCGAAAAGAAGATGAAAAGACGGCGAAGAAGAGGCCGGCTAGGGCAAGAGCTACACAGA ATCGGTACGACCGATCCTCACCAGCTCTCGCGGTGTTGTAG
AA sequence Show only first row Show all	>Lus10020272 pacid=23144105 polypeptide=Lus10020272 locus=Lus10020272.g ID=Lus10020272.BGIv1.0 annot-version=v1.0 MDRLIKLEPSNVAAIRIDPSGKNCSGELVLRNVMYTMPVAFRIQALNKNRYSIKPQSGVISPLAVQSIEITYILRPDSDLPEKFPHSDDSFLLHSVVVPG AAIKDLEAVPNEWFTARKKQVFQDSGLKVMFVGAPVLARMVVDGGAVDEIREVLERSDPSWKAADAVDHHCEPLVNIAIARGSGDLGPGGRADLVQLLLE FGPDVESRGRSGSTPLEVASGSGESLIFELLLAHGASTERSKTSSWGPIHLAAGGGHVDVLRLLLTKGARVDSLTKDGNTALHIAVEQRRRDCARLLIGG GARVDLRNGRDGDTPLHVAARIGDENMVRVLLSKGGANKGIRNRNCHTAYDIAMEYGHVRLFDALKLGDSLCVAARKGDVREIQRLTEGGATVNGRDQHG WTALHRAAFKGKIDAVRTLLEKGINIDSKDEDGYTALHCAVEAGQADVIELLVKKNIDVDARTNKGVSALQIAESLHYAGITRVLINGGASREDANDHVK DPTHVSSKNGLMSARKEDEKTAKKRPARARATQNRYDRSSPALAVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10020272 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008614 [exp]	2.6	0.9358
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	4.0	0.9118
AT3G19950			RING/U-box superfamily protein...		Lus10033682 [exp]	4.9	0.8684
AT1G17860			Kunitz family trypsin and prot...		Lus10030354 [exp]	5.3	0.9255
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	5.9	0.8888
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	8.1	0.9078
AT2G27410	B3		Domain of unknown function (DU...		Lus10027286 [exp]	8.7	0.9237
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	11.5	0.8374
					Lus10030774 [exp]	14.0	0.9113
AT5G42510			Disease resistance-responsive ...		Lus10000376 [exp]	16.6	0.7879

Compare expression of checked genes

Lus10020272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.