Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002619 [exp] 160 / 1e-47 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061500 [exp] 55 / 3e-09 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020274 pacid=23144120 polypeptide=Lus10020274 locus=Lus10020274.g ID=Lus10020274.BGIv1.0 annot-version=v1.0 ATGTTCGATCTCATTTGCATGTCTTCTTGGTTAGACAACTCGAATCAGAGCTCTAATCAACTCGTTCATCATCAGTACGTCCCGCCTCAACCGTCCATGC CAATCAAACAAATGGAATCCATGGGCAACTCGAGTGGGAGCAAAAGAAAACAAGAGCCTCACTTCCCATTTCCGAGTAACTCAATTCTTCTCGAGCATCT TCATCGGCATATCCAGTCTGAACGTGCTGCATCATCCGAAAAAGGCACTGAGCCATCTGTTACCCAACCCTGTTCAAAAATCAACACTGTCCTCGTAAAC CCTCCAGTTGGCCAAGCCTCTTCCTCCACTAAAGGAGGTATAAGTTCGAGTGTCCAACATCTTATTGGAACCAGCATTCAACAGCAGAACAGGATCGTGG TTCATCCTCGAAACGTCAGTGTCGCTTACCCTAATGGCAGCAACGTGCTACCGATCAGCGATGATGATTGA
AA sequence Show only first row Show all	>Lus10020274 pacid=23144120 polypeptide=Lus10020274 locus=Lus10020274.g ID=Lus10020274.BGIv1.0 annot-version=v1.0 MFDLICMSSWLDNSNQSSNQLVHHQYVPPQPSMPIKQMESMGNSSGSKRKQEPHFPFPSNSILLEHLHRHIQSERAASSEKGTEPSVTQPCSKINTVLVN PPVGQASSSTKGGISSSVQHLIGTSIQQQNRIVVHPRNVSVAYPNGSNVLPISDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020274 [exp]	0	1
					Lus10036784 [exp]	1.0	0.9333
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	2.4	0.9213
AT5G38760			Late embryogenesis abundant pr...		Lus10026292 [exp]	3.2	0.9325
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	4.0	0.9149
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	7.1	0.7894
					Lus10024863 [exp]	8.7	0.7541
AT5G44440			FAD-binding Berberine family p...		Lus10003646 [exp]	10.2	0.7682
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10016357 [exp]	19.6	0.8875
					Lus10023136 [exp]	23.5	0.8442
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10026959 [exp]	29.5	0.6863

Compare expression of checked genes

Lus10020274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.