Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03860 266 / 2e-88 ATAPRL5 APR-like 5 (.1) AT5G18120 261 / 1e-86 ATAPRL7 APR-like 7 (.1) AT1G34780 119 / 2e-31 ATAPRL4 APR-like 4 (.1.2) AT4G08930 107 / 5e-27 ATAPRL6 APR-like 6 (.1) AT1G04980 48 / 4e-06 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 45 / 3e-05 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT2G47470 45 / 4e-05 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G52260 42 / 0.0004 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005703 [exp] 484 / 2e-174 AT3G03860 310 / 7e-106 APR-like 5 (.1) Lus10036486 [exp] 119 / 4e-31 AT1G34780 272 / 2e-90 APR-like 4 (.1.2) Lus10010354 [exp] 113 / 2e-29 AT1G34780 268 / 2e-89 APR-like 4 (.1.2) Lus10020928 [exp] 108 / 3e-27 AT1G34780 259 / 2e-85 APR-like 4 (.1.2) Lus10033449 [exp] 104 / 8e-26 AT1G34780 260 / 8e-86 APR-like 4 (.1.2) Lus10018156 [exp] 43 / 0.0002 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 42 / 0.0005 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10036337 [exp] 41 / 0.001 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10035360 [exp] 41 / 0.001 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G057100 [exp] 338 / 6e-117 AT5G18120 293 / 3e-99 APR-like 7 (.1) Potri.019G035700 [exp] 303 / 4e-103 AT5G18120 277 / 4e-93 APR-like 7 (.1) Potri.002G097601 [exp] 122 / 2e-32 AT1G34780 357 / 9e-124 APR-like 4 (.1.2) Potri.005G164200 [exp] 109 / 1e-27 AT1G34780 364 / 1e-126 APR-like 4 (.1.2) Potri.014G160000 [exp] 47 / 8e-06 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.002G082100 [exp] 44 / 0.0001 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 42 / 0.0005 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10020283 pacid=23144101 polypeptide=Lus10020283 locus=Lus10020283.g ID=Lus10020283.BGIv1.0 annot-version=v1.0 ATGTTTCCGGCGGTGTCGGCTTTTGTGTTCCTCTTCACCATCCGATTCGTTTCTTCGTCGGGGACGACGACGGTGCCGGGTTCGAATACCTGCCCGAGTG ATTTGGTTCTGTTCGTCTACAATCTCCAATCTCAATGCCATCCTTCGATCTCCTCCAATCCTCCTCTCCAGGTGGATGGGAACTTCGTTGAGCGAGCACT GACTTCACCTTGGGGAAATGCTTATACTTCGTTGTTCTTCTACGCTTCGTGGTGCCCCTTTTCGCGCAGCATGAGACCGAAGTTCGAATCTCTTGCTGCC ATGTTCCCTCAGATTGAGCATTTGGCTGTTGAACAATCTTCCGCTTTCCCAAGATGTGGAATCCATAGCTTTCCATCCATATTGATGGTCAACCAGACAA TGAAAGTGCGATATAGAGGGCCTAAAGATCTACAGTCGCTCGTGCAATTTTATGTCAAAACAACAGGACTTGAGCCTGTGCAATATCTCACTGAGCCCGA GGCAACTAATTTGCAGAGTCACGGGAACAGCATCTTGCAGCCGTGGGACGGGTCACCTCTGGAGCAAGTATTGAGAAGGGAACCATATTTGGCATTATCC ATCTTGTTCCTCTGCTTCCGAGTGATACTATTTCTTTCTCCTAAACTCTTACTTCACCTCAAGTCCTTTTGTTCCTCCAACATCCCTCATTTGAACTTGG GAATGTTCGGCGAGACAAGCCAACTGTTTGAGCGTATTCTCCACCTGGTAGACGTGAGGCGTATCTGGACCAAGCTTAGACTATGCAAGACTAGGAATTT CCACGAGGGGGCGAAAAACTGCCGCGCCTGGGCTTCTTCCTTTGCCTCAGTTTCGCTCGGTGAATCTTCATCATCATCAGCTAGGTTGTGA
AA sequence Show only first row Show all	>Lus10020283 pacid=23144101 polypeptide=Lus10020283 locus=Lus10020283.g ID=Lus10020283.BGIv1.0 annot-version=v1.0 MFPAVSAFVFLFTIRFVSSSGTTTVPGSNTCPSDLVLFVYNLQSQCHPSISSNPPLQVDGNFVERALTSPWGNAYTSLFFYASWCPFSRSMRPKFESLAA MFPQIEHLAVEQSSAFPRCGIHSFPSILMVNQTMKVRYRGPKDLQSLVQFYVKTTGLEPVQYLTEPEATNLQSHGNSILQPWDGSPLEQVLRREPYLALS ILFLCFRVILFLSPKLLLHLKSFCSSNIPHLNLGMFGETSQLFERILHLVDVRRIWTKLRLCKTRNFHEGAKNCRAWASSFASVSLGESSSSSARL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	0	1
AT3G49800			BSD domain-containing protein ...		Lus10019271 [exp]	1.4	0.8592
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	3.5	0.8480
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10035933 [exp]	4.2	0.8365
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	4.5	0.8253
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	5.9	0.8209
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	6.9	0.8201
AT1G13900			Purple acid phosphatases super...		Lus10037091 [exp]	7.1	0.7908
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	7.1	0.8072
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10021625 [exp]	7.7	0.7870
					Lus10041517 [exp]	13.9	0.8229

Compare expression of checked genes

Lus10020283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.