Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18130 148 / 2e-43 unknown protein AT3G03870 129 / 2e-36 unknown protein AT4G10080 52 / 1e-07 unknown protein AT4G13530 50 / 5e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005702 [exp] 444 / 3e-160 AT5G18130 157 / 5e-47 unknown protein Lus10041074 [exp] 52 / 1e-07 AT4G13530 170 / 2e-50 unknown protein Lus10003531 [exp] 52 / 1e-07 AT4G13530 186 / 7e-55 unknown protein Lus10030342 [exp] 51 / 4e-07 AT4G13530 176 / 1e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G035600 [exp] 181 / 7e-56 AT5G18130 159 / 8e-47 unknown protein Potri.013G057200 [exp] 147 / 7e-43 AT5G18130 138 / 7e-39 unknown protein Potri.019G071300 [exp] 50 / 6e-07 AT4G10080 125 / 3e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020284 pacid=23144062 polypeptide=Lus10020284 locus=Lus10020284.g ID=Lus10020284.BGIv1.0 annot-version=v1.0 ATGGATCTGGAAGAGTGGGAAGTCCTCCCTCGTGACGCGAGCTTCTTCGACTTCCATGGCGATGGCGGCAGCAAGCAGAAGATGATGCTTCCACTTCCAC TTTCCCCTCGCGCAAAAGGTTCTACTACTATCTCGAGTCTCGTCAATACTGATGATTTCGTCGATATGAATTACTTCTCCATCTCCCGCGTGGTTGTGCC TCGGAGCCATCTGATCCCTTTTGAATTGGAACCAGAATCAGAACCCGTACCGAACCCGGATCCAGAACCGGAATCCGCATCGCAAGTTTTCTTCAAGAAG ATGAAGGAAACTGAATTCGTCGACATGAAAATGGACTCGCCCAAGTCGCAGACTTCGTCATCGCCGGTGTGGGAGTCTCCTAGGTTGGAATCCTCTGGGA AGTTCAGCTTCGACGATGACGATGGTGATGAATTGAGCAGCTGTTCATCTCCCAGGATGGTGAAAGTCAATGATGATGAGACTAACGGTGCGTTGAATCT GTGGAAATGGAGCTTGCATGGGATTGGAGCCATCTGTTCATTTGGATTTGCTGCTGCTACTGTCTGCATCATCATATTTGGGAGGAACAAGCAGCTGCAG AATCAGCAGCTCAGGTTCCAGATTTACACTGATGACAAGAGGGTGAAGCAAGTGGTGCAGCATGCGACGAGGTTCAACGACGCGATTTCGGCGGTGAGAG GGGTTCCGATCGCTAGGGCTCAAGTCACATTTGGTGGCTACTATGATGCCATTTGA
AA sequence Show only first row Show all	>Lus10020284 pacid=23144062 polypeptide=Lus10020284 locus=Lus10020284.g ID=Lus10020284.BGIv1.0 annot-version=v1.0 MDLEEWEVLPRDASFFDFHGDGGSKQKMMLPLPLSPRAKGSTTISSLVNTDDFVDMNYFSISRVVVPRSHLIPFELEPESEPVPNPDPEPESASQVFFKK MKETEFVDMKMDSPKSQTSSSPVWESPRLESSGKFSFDDDDGDELSSCSSPRMVKVNDDETNGALNLWKWSLHGIGAICSFGFAAATVCIIIFGRNKQLQ NQQLRFQIYTDDKRVKQVVQHATRFNDAISAVRGVPIARAQVTFGGYYDAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18130			unknown protein		Lus10020284 [exp]	0	1
AT5G18130			unknown protein		Lus10005702 [exp]	1.0	0.9046
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10005936 [exp]	2.8	0.8573
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10039574 [exp]	5.0	0.7954
AT3G57120			Protein kinase superfamily pro...		Lus10038716 [exp]	5.7	0.7883
AT3G04880		DRT102	DNA-DAMAGE-REPAIR/TOLERATION 2...		Lus10015936 [exp]	8.5	0.7996
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	10.6	0.7772
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	10.8	0.7613
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Lus10021769 [exp]	11.5	0.7724
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	14.9	0.8218
AT5G17680			disease resistance protein (TI...		Lus10019708 [exp]	20.0	0.7919

Compare expression of checked genes

Lus10020284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.