Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18140 228 / 8e-73 Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 86 / 2e-18 DNAJ heat shock family protein (.1) AT4G39960 85 / 4e-18 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 81 / 1e-16 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 76 / 4e-15 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G59610 72 / 2e-14 Chaperone DnaJ-domain superfamily protein (.1.2) AT2G20560 64 / 2e-11 DNAJ heat shock family protein (.1) AT5G48030 64 / 4e-11 GFA2 gametophytic factor 2 (.1) AT5G05750 63 / 4e-11 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G62600 63 / 4e-11 ATERDJ3B DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005699 [exp] 114 / 4e-31 AT5G18140 75 / 1e-16 Chaperone DnaJ-domain superfamily protein (.1) Lus10023148 [exp] 85 / 4e-18 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 84 / 1e-17 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10020949 [exp] 77 / 1e-15 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10023122 [exp] 77 / 3e-15 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 76 / 5e-15 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10031336 [exp] 72 / 8e-14 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10019669 [exp] 67 / 2e-13 AT4G13830 76 / 9e-18 DNAJ-like 20 (.1.2) Lus10019668 [exp] 66 / 4e-13 AT4G13830 82 / 6e-20 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058100 [exp] 265 / 4e-87 AT5G18140 264 / 1e-86 Chaperone DnaJ-domain superfamily protein (.1) Potri.019G035100 [exp] 225 / 2e-71 AT5G18140 225 / 3e-71 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G073900 [exp] 83 / 2e-17 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 80 / 2e-16 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.015G035300 [exp] 78 / 7e-16 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.003G031800 [exp] 76 / 3e-15 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G160200 [exp] 75 / 1e-14 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.001G271300 [exp] 70 / 4e-13 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 69 / 5e-13 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.016G120000 [exp] 68 / 2e-12 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10020286 pacid=23144201 polypeptide=Lus10020286 locus=Lus10020286.g ID=Lus10020286.BGIv1.0 annot-version=v1.0 ATGCAGGCTCACCTCCAGGTGGGACCCGTCCCCACGGCCTCCTCCCACTTGACCGACTCTATTCTCTTCCCCTCCTCCTCCTCCTCATCCTGCCTGTTCA CTTCCATCGCCGCACCACCGTGGAGGGGCAGCTGGCATCACCGCCGCCAGCGTTGTCTCATCTTCGCGTCTTCATCACGATCGTCGATCAACGGAAACCG TGACTATTACTCCGTGCTATCCGTCGAACGGAACGCCTCCCCTGCCGACATCAAGCGTGCCTATCGCCTTCTTGCTCGTCAGTATCATCCTGATGTTAGC AAGCATGCACAGGCTGGCGAGATGTTCAAAAGCATTCGCCGAGCATACGAAACACTGTCGAACGAATCGAAAAGAACGCAGTATGATCGAGAATTGAGAC TCCAGGAGTATAGAGGCCGGGTTGTTGACAGAAGGAAACAACAGTATTACAGTCATCAATTTGTAGATGAGGAAAGGGTCTACAGGTGGGCGGAAGCAAA GCGGAGGAGAATGGCTTATTATGATGCTGAAGAAGAGGACGAAGAAGACGAGACAATAATGGCTGAAGAAGAAGGAAGAAGCTCGGGTCAAGAGAGGGCG CCTTTTGTTGAAGTGCTGAAGTCTGCATTTTTATCACTCTTCTTACTCAAGACGTTGGGAGCTCAAGTCTCGATCACGTGCAGCAGCCTGATGGCAATGT TCGATCCGAAGCTGGATGCTGGATATAAAACGGGTCATTTGATTGCGTGGATTCTCGGGGGAAGGAACGGGGTTATGCTTACATTGTGCATCCAGTTTAC GAGCTGGGTGTGTGGGAAGAGTAGCAGCAGTATGGTTACTCTGATGGTGGTAGCCATGTGGATGGTGTCCAATCTGGCTCAATATGCTCCTTTGCCGACA GGTGCTGTCCTTACGCTTCTTCACATGTCGATGAAGCTGCAGGTTGACCTTACTTGA
AA sequence Show only first row Show all	>Lus10020286 pacid=23144201 polypeptide=Lus10020286 locus=Lus10020286.g ID=Lus10020286.BGIv1.0 annot-version=v1.0 MQAHLQVGPVPTASSHLTDSILFPSSSSSSCLFTSIAAPPWRGSWHHRRQRCLIFASSSRSSINGNRDYYSVLSVERNASPADIKRAYRLLARQYHPDVS KHAQAGEMFKSIRRAYETLSNESKRTQYDRELRLQEYRGRVVDRRKQQYYSHQFVDEERVYRWAEAKRRRMAYYDAEEEDEEDETIMAEEEGRSSGQERA PFVEVLKSAFLSLFLLKTLGAQVSITCSSLMAMFDPKLDAGYKTGHLIAWILGGRNGVMLTLCIQFTSWVCGKSSSSMVTLMVVAMWMVSNLAQYAPLPT GAVLTLLHMSMKLQVDLT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10020286 [exp]	0	1
AT5G25280			serine-rich protein-related (....		Lus10008808 [exp]	1.0	0.7735
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	4.2	0.7713
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10026047 [exp]	5.5	0.7351
AT3G62190			Chaperone DnaJ-domain superfam...		Lus10038040 [exp]	7.7	0.6944
AT1G34570			Essential protein Yae1, N-term...		Lus10019775 [exp]	12.2	0.6385
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	13.1	0.7237
AT1G55365			unknown protein		Lus10013409 [exp]	13.7	0.6517
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	14.7	0.7084
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10029939 [exp]	18.8	0.6877
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	21.4	0.7023

Compare expression of checked genes

Lus10020286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.