Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18170 780 / 0 GDH1 glutamate dehydrogenase 1 (.1) AT3G03910 766 / 0 GDH3 glutamate dehydrogenase 3 (.1) AT5G07440 710 / 0 GDH2 glutamate dehydrogenase 2 (.1.2.3) AT1G51720 126 / 2e-31 Amino acid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005697 [exp] 842 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10003858 [exp] 811 / 0 AT5G18170 782 / 0.0 glutamate dehydrogenase 1 (.1) Lus10032509 [exp] 709 / 0 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10043007 [exp] 590 / 0 AT5G07440 649 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10006872 [exp] 123 / 3e-30 AT1G51720 1019 / 0.0 Amino acid dehydrogenase family protein (.1) Lus10037612 [exp] 100 / 3e-22 AT1G51720 947 / 0.0 Amino acid dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058300 [exp] 795 / 0 AT5G18170 787 / 0.0 glutamate dehydrogenase 1 (.1) Potri.019G034800 [exp] 782 / 0 AT5G18170 783 / 0.0 glutamate dehydrogenase 1 (.1) Potri.015G111000 [exp] 722 / 0 AT5G07440 773 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.012G113500 [exp] 717 / 0 AT5G07440 766 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.001G199600 [exp] 127 / 9e-32 AT1G51720 1033 / 0.0 Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF02812 [flax] [poplar] ELFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CL0063 [flax] [poplar] NADP_Rossmann PF00208 [flax] [poplar] ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10020288 pacid=23144163 polypeptide=Lus10020288 locus=Lus10020288.g ID=Lus10020288.BGIv1.0 annot-version=v1.0 ATGAATGCATTAGCAGCAACGAACCGGAACTTCAAGCTAGCAGCAAGGCTGCTGGGTCTGGACTCCAAGCTCGAGAAGAGCTTGCTCATCCCTTTCAGAG AAATCAAGGTTGAGTGTACTATACCAAAGGATGATGGGACTTTGGCATCCTTTGTTGGGTTCAGAGTTCAGCATGACAATGCCAGAGGACCCATGAAGGG AGGAATCAGATACCACCCAGAGGTTGACCCGGACGAAGTGAATGCACTAGCACAGCTGATGACATGGAAGACTGCAGTGGCCAACATCCCATATGGAGGT GCCAAAGGTGGGATTGGATGCTCACCAGGTGACTTGAGCATCTCAGAGCTTGAGAGGCTTACTAGGGTTTTTACACAGAAGATCCATGACCTCATTGGAG TCCACATTGATGTTCCTGCTCCTGATATGGGTACTGGCCCTCAGACTATGGCTTGGATTCTAGATGAGTACTCCAAGTTTCATGGCCACTCACCTGCTGT TGTCACAGGAAAGCCTATTGATCTCGGTGGCTCGCTTGGTCGAGATGCTGCAACGGGGAGAGGAGTTATGTTTGCAACAGAAGCATTGCTTAACGAGCAC GGCAAGTCTATCTCGGGGCAGCGATTCGTTATACAGGGATTTGGCAATGTGGGTTCATGGGCTGCACAACTGATTCATGAGCAAGGTGGTAAAGTTGTTG CTGTAAGTGACATCACTGGTGCTATAAAGAACAGCAAAGGACTTGACATCCCAAGTCTCTTCAAACATTGGAAGGAGAACAAAGGTGTTAAAGGGTTCCA TGGAGCCGATTCGATCCATCCGGATTCGATACTAGTCGAGGACTGCGACATCCTCATTCCGGCTGCCCTTGGTGGTGTCATCAACAGGGAAAATGCGAAC GATATCAAAGCCAAGTTCATCGTCGAAGCTGCGAATCATCCTACTGATCCAGAGGCTGACGAGATTTTGTCAAAGAAAGGTGTTGTGATACTTCCAGACA TTTATGCAAACTCTGGTGGAGTCACAGTTAGCTACTTTGAGTGGGTGCAGAACATTCAAGGATTCATGTGGGAGGAAGAGAAGGTGAATGATGTCCTGAA GACTTACATGACCAAAGGGTTCAAGGATGTGAAGGAGATGTGCAAAACCCACGACTGCGACCTCAGGATGGGCGCATTCACACTTGGAGTCAACCGTGTC GCTCGAGCCACTGTTCTTCGAGGTTGGGAAGCCTAA
AA sequence Show only first row Show all	>Lus10020288 pacid=23144163 polypeptide=Lus10020288 locus=Lus10020288.g ID=Lus10020288.BGIv1.0 annot-version=v1.0 MNALAATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGG AKGGIGCSPGDLSISELERLTRVFTQKIHDLIGVHIDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVMFATEALLNEH GKSISGQRFVIQGFGNVGSWAAQLIHEQGGKVVAVSDITGAIKNSKGLDIPSLFKHWKENKGVKGFHGADSIHPDSILVEDCDILIPAALGGVINRENAN DIKAKFIVEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNDVLKTYMTKGFKDVKEMCKTHDCDLRMGAFTLGVNRV ARATVLRGWEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	0	1
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	1.7	0.9686
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	2.8	0.9609
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Lus10031767 [exp]	3.9	0.9228
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	5.2	0.9453
AT1G33030			O-methyltransferase family pro...		Lus10009442 [exp]	5.3	0.9350
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	6.3	0.9350
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028502 [exp]	6.9	0.9238
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	7.5	0.9441
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	7.5	0.9233
AT5G39150			RmlC-like cupins superfamily p...		Lus10003114 [exp]	7.9	0.9004

Compare expression of checked genes

Lus10020288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.