Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03920 183 / 6e-59 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1) AT5G18180 170 / 6e-54 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058400 [exp] 187 / 1e-60 AT3G03920 181 / 7e-58 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1) Potri.019G034900 [exp] 185 / 9e-60 AT3G03920 180 / 1e-57 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF04410 [flax] [poplar] Gar1 Gar1/Naf1 RNA binding region
Representative CDS sequence Show only first row Show all	>Lus10020289 pacid=23144068 polypeptide=Lus10020289 locus=Lus10020289.g ID=Lus10020289.BGIv1.0 annot-version=v1.0 ATGGTGCCACCTAGAGGAGGCGGGTTTAGAGGAGCAAGAGGCGGTGGCGGTAGAGGATTCGGCGGTGGCCGTGGCGGCGGTGGCAGAGGTTTTGGTGGTG GACGTGGCGGCGGTGGCAGGGGTTTCGGTGGTGGGTTTCGTGATGAGGGACCTCCTTCTGAAGTCGTAGAGGTGTCGAAGTTTGTTCATGCCTGCGAGGG TGATGCAGTGACGAAGCTGACCAACGAGAAGATCCCGTACTTCAACGCTCCGATCTTTCTGGAGAACAAGACTCAGATAGGGAAAGTGGACGAAATCTTT GGCCCCATTAACGAATCTTTCTTCTCTATCAAGATGATGGAAGGGATCGTGGCGAATTCTTACTCTGCTGGTGACAAATTCTTCATCGACCCCATGAAGC TATTGCCTCTTGCTAGATTCCTGACACAGCCAAAGGGAGCGGCATCTGCGGGAAGAGGAGGAGGCCGAGGAGGAGGCAGGGGAGGAGGTTTTAGAGGTGG TGGCCGTGGAAGGGGAGCTCCGCGAGGTGGCAGAGGACCTCCTAGAGGTGGCCGTGGCGGCTTTAGGGGTAGAGGGAGATTTTAG
AA sequence Show only first row Show all	>Lus10020289 pacid=23144068 polypeptide=Lus10020289 locus=Lus10020289.g ID=Lus10020289.BGIv1.0 annot-version=v1.0 MVPPRGGGFRGARGGGGRGFGGGRGGGGRGFGGGRGGGGRGFGGGFRDEGPPSEVVEVSKFVHACEGDAVTKLTNEKIPYFNAPIFLENKTQIGKVDEIF GPINESFFSIKMMEGIVANSYSAGDKFFIDPMKLLPLARFLTQPKGAASAGRGGGRGGGRGGGFRGGGRGRGAPRGGRGPPRGGRGGFRGRGRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03920			H/ACA ribonucleoprotein comple...		Lus10020289 [exp]	0	1
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10002172 [exp]	1.4	0.9099
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10039889 [exp]	2.0	0.8987
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10015609 [exp]	3.2	0.8977
AT3G03590			SWIB/MDM2 domain superfamily p...		Lus10005667 [exp]	4.2	0.9023
AT1G15190			Fasciclin-like arabinogalactan...		Lus10023183 [exp]	7.7	0.9060
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10011874 [exp]	8.5	0.8424
AT1G20580			Small nuclear ribonucleoprotei...		Lus10012263 [exp]	9.2	0.8675
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004302 [exp]	12.0	0.8660
AT3G53430			Ribosomal protein L11 family p...		Lus10015086 [exp]	13.3	0.8621
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	14.1	0.8790

Compare expression of checked genes

Lus10020289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.