Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02320 870 / 0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) AT5G15810 869 / 0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) AT3G56330 92 / 1e-19 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005696 [exp] 639 / 0 AT5G15810 549 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10030535 [exp] 86 / 1e-17 AT3G56330 548 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10029044 [exp] 73 / 3e-13 AT3G56330 508 / 5e-179 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10012884 [exp] 46 / 7e-05 AT3G56330 431 / 4e-150 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G099200 [exp] 929 / 0 AT3G02320 918 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Potri.004G117900 [exp] 928 / 0 AT3G02320 915 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Potri.013G093500 [exp] 88 / 2e-18 AT3G56330 533 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02005 [flax] [poplar] TRM N2,N2-dimethylguanosine tRNA methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020290 pacid=23144047 polypeptide=Lus10020290 locus=Lus10020290.g ID=Lus10020290.BGIv1.0 annot-version=v1.0 ATGAACTTATTGCCAGTTGCAAAATCACTGAAACTGCCAAAATCAAGCAAATTTGGTCTTCTATCGCTAAAGTCTCTGTCTTTGAAAGCTTCTGCTGCAA CAACAATGGCGGATCTCGAGGATTACACCATAGTCAAGGAAGGGCAGGCTGAGATCGTCATGCACGCCAAAAACGAAGTGTTCTACAACAAAACCCAGGT TAACAACAGGGATTTATCAATCGCTGTGCTGAGGACCTTCATATCCAAGCGAAAGGAAGAGCATGAAGCAAATTTGTCCAAGAGAGCTAAGAAGTCAGGG CGTAAGGTATCTGAGAATAATGGTGCAGCTCCTGAAGCTGCTGCTGCTGCTGAGAAGGGTGGCGATGAAGAGCCTTGCAGTACCTCTGAGGAAATGGTGG AGGGGAAAGCTCGGGGGGAGCTCAAGCCGCCCAGAGTTCTCGAGGCTTTGTCTGCATCGGGGTTAAGAGCTTTGAGATATGCTCGTGAGATTGAAGGGAT CGGTCAGGTTGTTGCTTTGGACAATGATAAGGCTTCCGTCGAAGCTTGCAGGAGAAATATAAAGTTCAATGGTTCGGTAGCGATGCAGAAGGTGGAATCA AATCTTGCGGATGCTCGTGTGTACATGTTGACTCACCAGAAGGAGTTTGATGTGGTTGATCTTGATCCTTATGGATCACCATCAGTGTTTCTGGACTCCG CGGTTCAGTCTGTTGTTGACGGTGGCATTCTGATGTGCACTGCAACGGATATGGCGGTGCTCTGTGGAGGTAATGGGGAGGTTTGCTATTCCAAGTACGG ATCGTACCCCTTGAGGGGAAAATACTGCCATGAAATGGCTTTGAGGATCCTTCTTGCTTCAATTGAGAGCCATGCGAATCGTTACAAGCGGTACATTGTT CCTGTTCTATCAGTACAGATGGACTTCTACGTCAGGGTTTTCGTTCGCATCTATACTTCTGCCGGGGCGATGAAGAATACCCCTCTGAAGCTCTCGTACG TTTACCAATGTGTCGGATGCGATTCTTTCCATCTCCAGCCTATTGGAAGGACCCTTGCCAAGAACAACAGCGTACGGTATTTACCCGGGTTTGGCCCCGT GGTGCCTCAAGAATGCAACCACTGTGGGAAGAAGTTCAACATGGGCGGACCGATTTGGTCTGCACCGATCCACGATCCGGAGTGGGTGACATCGATCCTC GACGATGTGAAATCTATCAAGGAGCAGTATCCTGCTTACGAACGCATTTCTGCTGTACTGACAACAGTATCAGAGGAACTGCGTGATGTCCCTCTGTTCT TCAGCTTGCACAATCTCTGTGGAACGCTGAAATGCACTTCCCCATCTGCAGTGATCTTCCGATCGGCTGTGATCAATGCAGGATACCGCATCTCCGGTAC TCATGTGAACCCGCTAGGCCTGAAAACTGATGCTCCCATGGATGTCATATGGGATATCATGAGATGCTGGGTTAAGAATCATCCGGTGAAGCCTCAGCCA GCTGACCAGTCAGGAACTGTGATCCTCGCCAAGGAGCCAGTCCTGCAGGCCAACTTTGCTAGAGCCGGAGCATCGCTGAGCAAGGCGCAGGTGAAGAAAG TCGCCCGGTTTCTTCCCAACCCGGAGAGGCATTGGGGTCCTAAAGTCAAAGCTGGCCGCACCATCACTAGCAAGCACGTTTCTCTTCTGGGACCTGAGGC TGTGAATGGCTACCTCAACCACGAAAATGGCGGCGGTGGAGACGACGAGGAGAAGGAGGCCGAAGAGCGAGAAGCAAAGCGTCCGAAGACGGAAGAAGAA GAAGTGAAGAATGATGCTACCCTGCAGACTTCATAG
AA sequence Show only first row Show all	>Lus10020290 pacid=23144047 polypeptide=Lus10020290 locus=Lus10020290.g ID=Lus10020290.BGIv1.0 annot-version=v1.0 MNLLPVAKSLKLPKSSKFGLLSLKSLSLKASAATTMADLEDYTIVKEGQAEIVMHAKNEVFYNKTQVNNRDLSIAVLRTFISKRKEEHEANLSKRAKKSG RKVSENNGAAPEAAAAAEKGGDEEPCSTSEEMVEGKARGELKPPRVLEALSASGLRALRYAREIEGIGQVVALDNDKASVEACRRNIKFNGSVAMQKVES NLADARVYMLTHQKEFDVVDLDPYGSPSVFLDSAVQSVVDGGILMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLASIESHANRYKRYIV PVLSVQMDFYVRVFVRIYTSAGAMKNTPLKLSYVYQCVGCDSFHLQPIGRTLAKNNSVRYLPGFGPVVPQECNHCGKKFNMGGPIWSAPIHDPEWVTSIL DDVKSIKEQYPAYERISAVLTTVSEELRDVPLFFSLHNLCGTLKCTSPSAVIFRSAVINAGYRISGTHVNPLGLKTDAPMDVIWDIMRCWVKNHPVKPQP ADQSGTVILAKEPVLQANFARAGASLSKAQVKKVARFLPNPERHWGPKVKAGRTITSKHVSLLGPEAVNGYLNHENGGGGDDEEKEAEEREAKRPKTEEE EVKNDATLQTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Lus10020290 [exp]	0	1
AT4G35890			winged-helix DNA-binding trans...		Lus10014254 [exp]	1.4	0.9560
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	2.8	0.9420
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	10.8	0.9296
AT4G21520			Transducin/WD40 repeat-like su...		Lus10011253 [exp]	11.6	0.9243
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	14.3	0.9395
AT2G42520			P-loop containing nucleoside t...		Lus10015977 [exp]	14.8	0.9025
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	16.5	0.9323
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	16.7	0.9313
AT1G24310			unknown protein		Lus10015795 [exp]	17.0	0.9314
AT5G55200		MGE1	mitochondrial GrpE 1, Co-chape...		Lus10010247 [exp]	17.5	0.9227

Compare expression of checked genes

Lus10020290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.