Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52650 76 / 6e-15 F-box/RNI-like superfamily protein (.1) AT1G60400 73 / 5e-14 F-box/RNI-like superfamily protein (.1) AT1G60410 71 / 3e-13 F-box family protein (.1) AT3G59000 70 / 8e-13 F-box/RNI-like superfamily protein (.1.2) AT5G18780 69 / 2e-12 F-box/RNI-like superfamily protein (.1.2) AT4G13960 69 / 2e-12 F-box/RNI-like superfamily protein (.1) AT1G66310 67 / 5e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G38390 67 / 8e-12 F-box/RNI-like superfamily protein (.1) AT1G69630 66 / 9e-12 F-box/RNI-like superfamily protein (.1) AT5G02930 66 / 1e-11 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032255 [exp] 288 / 6e-95 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10006513 [exp] 234 / 1e-73 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10024702 [exp] 230 / 7e-73 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10029433 [exp] 211 / 1e-64 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10038967 [exp] 206 / 4e-61 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10038935 [exp] 197 / 6e-60 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10035564 [exp] 186 / 7e-56 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10027244 [exp] 185 / 1e-54 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10020329 [exp] 159 / 1e-47 AT3G58880 68 / 4e-14 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011200 [exp] 125 / 1e-32 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.015G002100 [exp] 122 / 2e-31 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 110 / 3e-27 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104300 [exp] 87 / 1e-18 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 80 / 2e-16 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 79 / 6e-16 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 67 / 8e-12 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002001 [exp] 65 / 2e-11 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G024200 [exp] 63 / 1e-10 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G121500 [exp] 59 / 2e-09 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10020292 pacid=23144184 polypeptide=Lus10020292 locus=Lus10020292.g ID=Lus10020292.BGIv1.0 annot-version=v1.0 ATGGTTTATTCATACATAATCGGCGCCTCGTTACTCCCCAAGTATTTTCGTAACAGTATAAGCAGAGAGGCAGAGCCAGATGAGATCAAGAATATTATTA TTACGGACAGACTGAGCGATCTTCCTGACCATATTTTGCACCACATTCTCTCCTTCCTCGACACTCAATCATCCGTGCAGACCAGCATTCTGTCGAGGAG GTGGAGATCTTTGTGGAAGTACGTTCCGATTCTCACCTTCGACACAGACCTATTCAGGACGCAGCTCGATTTCGAGCACCATGTGGACCGCTTTCTATCT CTTCGTTCCGGATTTAGCGTCTGCCAAATTAGCACCCTAGTAGGCATAGACGTGGCACTGAACAGCATCGATGTTTTCGATAGGATCATCAAACACGCCG CCTCTCACGGTATCCAACACTTAAACGTGGGCAGGCTTCTAGGTCACCCTGTAGCAGGCAAATCCGCCGTTACAGCAGTCTCCGGTTGCTACCGGTCTCT CAAGATTCTGGAATTAAATTATACAGAGTTGGACGAGGCAGCTGTCCGATCGTTGTCTCGTCTCCAACAGCTCGAGACTCTCAAGCTCTATGTCTGCCGC TTCAATGGCTTGCCGGAGGATGGTTTTGCTAGATTGGAAAACTTAGAACTGCTTTCTTGCTCTCCTCGTCCTTGTTCATCGGATAGAGCTCTGAAAATAT ATGGAACCCAACTGCTGAGGTTGGCGATGCGTCGGACATTTTTTTGCAGTATCGAAATTGTCGCACCTAAGCTCGAATACCTGTGTTTTTGGCATTCCAA TATGACGTTTCTAACCGACTTTTCCAAGTCGAAGCTTCCTTGCCTGGATCGTGCAGATGTTTACTTGGGTGTGATCAACCATGAGTTGTCGGACATATCG AAGAAGCAACCGATACTCGAGTGGTGTGCAAGTTTGTTCAATGTTTTGTATAACATAAGGTCTTTGGATTTGGAAATGCATACCTTTGAGCTGTTGATCC AGACTTGTGACATAGTGAAGCATCAATCTTCTCCCTTTAAACGAATAAAGTCGTTAAATTTGAAGTACTTTCAAGGATCCCACGAGTTACCCTATGAAGT CATTCGCTACTTTCTCCAAGGCTCCCGTGATGAAGAACTTAAGCCGCATTTTACCATTGAGAAGTCACGTTAG
AA sequence Show only first row Show all	>Lus10020292 pacid=23144184 polypeptide=Lus10020292 locus=Lus10020292.g ID=Lus10020292.BGIv1.0 annot-version=v1.0 MVYSYIIGASLLPKYFRNSISREAEPDEIKNIIITDRLSDLPDHILHHILSFLDTQSSVQTSILSRRWRSLWKYVPILTFDTDLFRTQLDFEHHVDRFLS LRSGFSVCQISTLVGIDVALNSIDVFDRIIKHAASHGIQHLNVGRLLGHPVAGKSAVTAVSGCYRSLKILELNYTELDEAAVRSLSRLQQLETLKLYVCR FNGLPEDGFARLENLELLSCSPRPCSSDRALKIYGTQLLRLAMRRTFFCSIEIVAPKLEYLCFWHSNMTFLTDFSKSKLPCLDRADVYLGVINHELSDIS KKQPILEWCASLFNVLYNIRSLDLEMHTFELLIQTCDIVKHQSSPFKRIKSLNLKYFQGSHELPYEVIRYFLQGSRDEELKPHFTIEKSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60410			F-box family protein (.1)		Lus10020292 [exp]	0	1
AT4G17260			Lactate/malate dehydrogenase f...		Lus10006030 [exp]	1.0	0.8556
AT1G52490			unknown protein		Lus10022937 [exp]	2.0	0.8030
AT2G42040			unknown protein		Lus10021062 [exp]	2.4	0.7064
AT1G52490			unknown protein		Lus10022939 [exp]	3.0	0.7379
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10003551 [exp]	10.2	0.7206
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	18.1	0.6977
AT5G27700			Ribosomal protein S21e (.1)		Lus10010971 [exp]	18.4	0.7200
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10000981 [exp]	21.6	0.6924
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	27.9	0.6861
AT1G18530			EF hand calcium-binding protei...		Lus10027243 [exp]	29.4	0.6725

Compare expression of checked genes

Lus10020292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.