Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35910 660 / 0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) AT1G54440 533 / 0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT2G32415 192 / 8e-51 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT2G25910 51 / 1e-06 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2) AT3G03560 45 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005691 [exp] 884 / 0 AT5G35910 814 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10039170 [exp] 868 / 0 AT5G35910 828 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020300 [exp] 793 / 0 AT5G35910 477 / 1e-157 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10015114 [exp] 180 / 7e-47 AT2G32415 1089 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10031563 [exp] 177 / 1e-45 AT2G32415 1039 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10005694 [exp] 98 / 5e-21 AT3G03560 501 / 3e-174 unknown protein Lus10020297 [exp] 97 / 2e-20 AT3G03560 489 / 3e-164 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G038701 [exp] 676 / 0 AT5G35910 846 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.013G062800 [exp] 663 / 0 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.002G229000 [exp] 183 / 6e-48 AT2G32415 1050 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Potri.013G073400 [exp] 63 / 5e-10 AT3G03560 568 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF00570 [flax] [poplar] HRDC HRDC domain CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10020293 pacid=23144110 polypeptide=Lus10020293 locus=Lus10020293.g ID=Lus10020293.BGIv1.0 annot-version=v1.0 ATGAAAAGGGATATTGTCGATTTTACTAACTTGACGGCCTTGATCATCCATTGGTATGCACTCAACGGCAATGACCTTATCAACATCATCAGCAGTAACT ATATATTCTGGAAACATCACAATGCATGCAAACCAACAAAGGCTGTAGAAGAGATTCGACTTGTTACCATCAATGTACTGCCTGGTGCCATCATCGAGAT GGCGGACCCACTGAAACATGCAAAGAGAGGTTCCTCGAACCGGACTGGCTGCGACGAGGCATCCGATTGGCTCGTCAACGTCAACAGCGAGGTGCTTGAG CGGTTCGACTCGTGGGTTGACGAGTTTGAGACGGTGCGGAAGGGGCAGGAGGAGGTTAGCGCGAAGGGGGCTTTGGATGAAGATGGGTTTCAGACGGTTT ACGGGAGGAATAATAAGAAGAAGAGTAACGTCTGGATTAATCCGAATAGCGGATTAGCTGCGGCGGGGAGCTCGGGTGGTGAGATAGGAGTTAAGGTTGC TGATAAGAAGGGGAATGTTGGCGGGAAGGCGAAGGTTCCGTTTCACATTCCGTCGATCAGGAGGCCGCAGGAAGAGTATAGTATCTTGGTGAATAATTCG AACCAGGCGTTTGAGCATGTCTGGTTGGAGAAGAGTGCTGATGGGACGCGGTTTGTTCATCCCTTGGAGAAGCTTTCTGTTTTAGACTTTGTGGGCAAAG ATGCTGGTGATATTGAGCCGGTGGTTCCACCTGCGGTAGAGAGTACCCCATTCAAGCTCGTGGAGGATGTCAAGGATTTGAAGGAGATGGCAGCTAAACT GCGTGCTGTCAATGAATTTGCGGTTGATTTGGAACACAATCAATTTCGTTCTTTTCATGGATTAACATGCCTGATGCAAATTTCAACAAGAACTGAGGAT TTCATTGTTGACACTTTAAAGCTCCGGATACACGTTGGTCCTTATCTCAGGGAACTTTTCAAGGATCCAACCAAAAAAAAGGTCCTGCATGGAGCAAACT CAGACATATTGTGGCTTCAAAGGGACTTTGGAATATATGTGTGCAATATGTTTGATACAGGACAGAGAATAGTGTCTGTTTCGCTAGCATACTCATTTCC TGTTATATGCAACACTGAAACACCCGTGGCTTGCAGATACCAGAATGCAGATTGGAGACTACGTCCTCTCCCTGTTGAGATGGTTAGATATGCTAGAGAA GACACCCATTATCTGCTATACATCTATGATCTAATGAGAGGCTTGTTGCATTCATTGCCTAAAGAAGCTGAAAATTCTGATACGCCACTGGTGGAGGTGT ACAAACGGAGTAATGATATTTGCATGCAGCTATATGAGAAGGATCTTCTTACGGAAAATTCATATATGCATATGTATGGGTTGCCAAGTGCCAACTTCAG TGCTCATCAGCTTGCGATTGTTTCAGGCCTCTATGAATGGAGAGATGCTATAGCCCGTACAGAAGATGAGAGTACAGGTTATATATTACCAAACAAAGTT CTGCTTGAAATCGCCAAGCAGATGCCTGTAACAACCAGCAAGTTGCGTCGCGTACTCAAATTGAATCACCAGTATATTGAGCGGCATCTCAGTTCTGTCG TTCAAGTTGTTCGACATCAAATGCAAAATGCTGCTGCATTTGAAACTGCTGTTCAGCAATTGAAGGAAGTGGCATTGGAAATGGTGCAAAAGAAGCAAGG CGGCATCTTCGGATCAATGCTTGGAAATGCAGTACCGAAGAAGCGAGCTGATACAGATAATAAGGTTGGATATCCTTCTCAATCGTCTTTGAGTTCCAGA AAGATCAAATCGTCGGTCAGTCTTCCATTCCACTCATTTGCAGGAGGAAACGAGCGACAACCAAAACCAGCCGTGGAAGAAGCGACAGCTAGGATTTCGC AAGATGCACATCCTGAAAAATCTCCAGCTGCAAAGGACATCATAATGTTGGACTCGGAGTCGAGCGTTGAAGAACTGGGTGATTCGGAAATGAAGGAATC AGCGGAGTTTCCATCCAAAGGAGACAATGAAACTGAACCGGTTACTCTATCTGATCTGTCTTCGAGCTTCGACAAGTGCTGCCGGTCTATAGACAAGAAG AGTGGAGTTGATAAGTCTACTCAGGGATCAAGCGATGTACCCCAGTTGAAGCAGTTTGATTACACTGCTGCGGCCAAGAAGCTGCTGAAGTTTGAGAAGG AGCCCAAGAAACCAGACGGGGCCATCGATGGGAAGAAATCGCCGTCGGTGGATCAGTCGTGTAAGAAGAGAAATTCGGCCGGTGGTGGAAGCGTTGAGAA AGACGACGATGGGGATGAATTCCGACAGGGTAGAAGGCGGCAGGCTTTTCCGGCCAGCGGCAACCGTAGCTTAAGCTACCGTTAA
AA sequence Show only first row Show all	>Lus10020293 pacid=23144110 polypeptide=Lus10020293 locus=Lus10020293.g ID=Lus10020293.BGIv1.0 annot-version=v1.0 MKRDIVDFTNLTALIIHWYALNGNDLINIISSNYIFWKHHNACKPTKAVEEIRLVTINVLPGAIIEMADPLKHAKRGSSNRTGCDEASDWLVNVNSEVLE RFDSWVDEFETVRKGQEEVSAKGALDEDGFQTVYGRNNKKKSNVWINPNSGLAAAGSSGGEIGVKVADKKGNVGGKAKVPFHIPSIRRPQEEYSILVNNS NQAFEHVWLEKSADGTRFVHPLEKLSVLDFVGKDAGDIEPVVPPAVESTPFKLVEDVKDLKEMAAKLRAVNEFAVDLEHNQFRSFHGLTCLMQISTRTED FIVDTLKLRIHVGPYLRELFKDPTKKKVLHGANSDILWLQRDFGIYVCNMFDTGQRIVSVSLAYSFPVICNTETPVACRYQNADWRLRPLPVEMVRYARE DTHYLLYIYDLMRGLLHSLPKEAENSDTPLVEVYKRSNDICMQLYEKDLLTENSYMHMYGLPSANFSAHQLAIVSGLYEWRDAIARTEDESTGYILPNKV LLEIAKQMPVTTSKLRRVLKLNHQYIERHLSSVVQVVRHQMQNAAAFETAVQQLKEVALEMVQKKQGGIFGSMLGNAVPKKRADTDNKVGYPSQSSLSSR KIKSSVSLPFHSFAGGNERQPKPAVEEATARISQDAHPEKSPAAKDIIMLDSESSVEELGDSEMKESAEFPSKGDNETEPVTLSDLSSSFDKCCRSIDKK SGVDKSTQGSSDVPQLKQFDYTAAAKKLLKFEKEPKKPDGAIDGKKSPSVDQSCKKRNSAGGGSVEKDDDGDEFRQGRRRQAFPASGNRSLSYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35910			Polynucleotidyl transferase, r...		Lus10020293 [exp]	0	1
AT3G47840			Tetratricopeptide repeat (TPR)...		Lus10019098 [exp]	2.8	0.6620
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	28.9	0.6197
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10037023 [exp]	32.0	0.6285
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10038669 [exp]	44.0	0.5673
					Lus10013649 [exp]	52.0	0.6014
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10003653 [exp]	66.6	0.5966
AT5G05800			unknown protein		Lus10024453 [exp]	85.7	0.5626
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041033 [exp]	90.2	0.5541
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10001483 [exp]	99.9	0.5849
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	115.3	0.5617

Compare expression of checked genes

Lus10020293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.