Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26790 207 / 7e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13800 176 / 2e-48 FAC19 embryonic factor 19, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 160 / 2e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61400 159 / 5e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 154 / 8e-41 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G09820 147 / 4e-39 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12775 147 / 6e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 146 / 4e-38 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 145 / 5e-38 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 144 / 1e-37 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005692 [exp] 557 / 0 AT2G26790 469 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020299 [exp] 492 / 1e-173 AT2G26790 251 / 2e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 152 / 3e-40 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022861 [exp] 149 / 1e-39 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10039056 [exp] 148 / 7e-39 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 147 / 2e-38 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 144 / 6e-38 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014242 [exp] 142 / 6e-38 AT1G62930 256 / 5e-78 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 145 / 9e-38 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066600 [exp] 267 / 4e-82 AT2G26790 521 / 4e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 174 / 4e-48 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.004G147700 [exp] 173 / 4e-48 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242200 [exp] 170 / 4e-47 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 166 / 8e-46 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 162 / 2e-44 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 162 / 3e-44 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074700 [exp] 160 / 3e-44 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 161 / 8e-44 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 162 / 2e-43 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020294 pacid=23144123 polypeptide=Lus10020294 locus=Lus10020294.g ID=Lus10020294.BGIv1.0 annot-version=v1.0 ATGCCGGCAACTTTGAATTCCCGGAACCGCCATCCGCCGTTGTTCGTCGCCGCTGAAAGAAGCTTGGAAGTTTGTCCATGTGGTTATCGGCGGGTGAAGG GAGGTGGGTTTCTTCACGATGTTTCAACTTACGCTGCCATGATTAAGATACTGTGTTTCTGGAGCTTGGACAGAAAACTGGATTCCATGCTCGACGAGCG TTTGATTGATTCGAACAGGGCTGATGCTGCAGTAGCGATTTATCTGCAGTTAGAGACTGGCTTCGGATTGAAACCGAATGATTACACTTTCGGCATTGTT GTCAAGGCTTTGTGTAAGAAAGGTAGGTTGGAAGAAGCAGAGACTCTAATCAGGGCAATGGTAGAAAACGGGATGACTCTGACTGCTTTCCTTATCTCGA CTTTTATCGAAGGGCTATGCGATCATAATAGCCCGTTTTTGGGGTATAAAGCTTTTCAGAGCTTTATCGAAGCTGAGTTTCCCATTGATGCATACGCGTT TACATCGCTGATTCGAGGGTTCTGTAACGTCAATAAACTAGACGAGGCTAAGGAGGTACTTGTCGAGATGGAAAGGCTCGGATTCGTTCCCGATGTGTAT GCTTATGGTCCTGTGATTCACTGGCTATGCAAGGTCGGGAAATTACTCGAAGCTTTGAGTATTCACGACGAGATGCTGTCGAATGGAGGAGAGACGAATT GCGAGGTTGTCAGCTCAATTCTTCAAGGGCTGTCTAATGCAGGCATGGTTTCGAAAGTTTCGAATCTGTTCAAGACCTGTAAAGATACCGGTATGTACCT CGATAAGGTTTGTTATAATTTAGTAATGAAGTCCTTCTGCACGTTAGCTGATGTGGAATCGGCTACCGGTTTACTAACCGAGATGAAAGAGAAGCGTATG GTTCCCGATCTGGTTAACTACACGACGTTGATCGATGGTTACTGTAACGAAGGTAAACTCCGCGAGGCCATGAAGTTCTTCGAAGAAATGAAGGACAATG GGATTGAACCCGATATTATCGTTTATAATGTACTTGTTTCTGGTTTCTCCAGATTAGGTCATACAGCGAGAATCGAAAGGCTTTTAGCCTACAGAAGGAT CATGGTATTGAACCTACGAACGATACTTACGGTATCATTATCGATGGGCTGTGCAATGCCGGGATATTGGAAGACGCTAAATCGTTCTTCTCCGAGCGGA TGA
AA sequence Show only first row Show all	>Lus10020294 pacid=23144123 polypeptide=Lus10020294 locus=Lus10020294.g ID=Lus10020294.BGIv1.0 annot-version=v1.0 MPATLNSRNRHPPLFVAAERSLEVCPCGYRRVKGGGFLHDVSTYAAMIKILCFWSLDRKLDSMLDERLIDSNRADAAVAIYLQLETGFGLKPNDYTFGIV VKALCKKGRLEEAETLIRAMVENGMTLTAFLISTFIEGLCDHNSPFLGYKAFQSFIEAEFPIDAYAFTSLIRGFCNVNKLDEAKEVLVEMERLGFVPDVY AYGPVIHWLCKVGKLLEALSIHDEMLSNGGETNCEVVSSILQGLSNAGMVSKVSNLFKTCKDTGMYLDKVCYNLVMKSFCTLADVESATGLLTEMKEKRM VPDLVNYTTLIDGYCNEGKLREAMKFFEEMKDNGIEPDIIVYNVLVSGFSRLGHTARIERLLAYRRIMVLNLRTILTVSLSMGCAMPGYWKTLNRSSPSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020294 [exp]	0	1
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	25.7	0.5407
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	38.7	0.5320
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	53.4	0.5091
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030183 [exp]	69.6	0.4961
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10039003 [exp]	79.6	0.5126
AT3G54500			unknown protein		Lus10024170 [exp]	100.9	0.4945
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036670 [exp]	176.2	0.4728

Compare expression of checked genes

Lus10020294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.