Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26790 74 / 9e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13800 73 / 2e-15 FAC19 embryonic factor 19, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62680 71 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 65 / 2e-12 RPF2 rna processing factor 2 (.1) AT1G31840 64 / 2e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62930 64 / 3e-12 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 63 / 6e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 63 / 6e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 62 / 8e-12 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64580 62 / 1e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020298 [exp] 314 / 7e-109 AT2G26790 208 / 1e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005692 [exp] 311 / 1e-102 AT2G26790 469 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 68 / 1e-13 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028943 [exp] 66 / 2e-13 AT5G01110 299 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027974 [exp] 61 / 4e-11 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 61 / 5e-11 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008185 [exp] 60 / 1e-10 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 58 / 4e-10 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019081 [exp] 57 / 7e-10 AT5G61400 406 / 7e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066600 [exp] 94 / 1e-22 AT2G26790 521 / 4e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 64 / 2e-12 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G276500 [exp] 64 / 4e-12 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 62 / 1e-11 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 59 / 1e-10 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G141800 [exp] 59 / 2e-10 AT2G06000 588 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.019G019300 [exp] 58 / 4e-10 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G243800 [exp] 58 / 4e-10 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 57 / 6e-10 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.007G068400 [exp] 57 / 7e-10 AT3G22470 300 / 8e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020295 pacid=23144149 polypeptide=Lus10020295 locus=Lus10020295.g ID=Lus10020295.BGIv1.0 annot-version=v1.0 ATGAGAAAGATAGGAGGGTTGGATCTCTGTAACGCCATGGTTAACGGCTGCTGCTGTATGAAAAGCGTCAAAAAAGCGCTTAGACTGTTTGTTTCTGTGT CGCAACAGGGGTATATACTAAAGAAGAGTACTTGTTTGAAGGTTATTTCCAGTTTGGAATACGATATGGCGAAATACGTCCAGCTGGCGGAGACGATGCT AAATCTAGAAGCGGATTATTCGTGTATGTTATGCAGCAGGATCATCGGAAAGCTTTCTCGTGCCGGAGAAATGGAAAAGGCCAGATACGTACTGCATCTT CTCGATCGGAGAGAGATGAGCGCCGATCTGGTGGCGTACACGATGATGATACAGGGCTATTGCAGGGTAAATCAGCTGGAAGAGGGCTTCAAGGTTCTTG ACGAAATGAAGAAACGAGGGATCGAACTGGAGATTGTGACTTTCATGGTTTTGCTCGACGGGGCGTTGAAGAATTCTGACGGGAGCAGAAGGAAACAGGA GGCAGATGATTTTTAG
AA sequence Show only first row Show all	>Lus10020295 pacid=23144149 polypeptide=Lus10020295 locus=Lus10020295.g ID=Lus10020295.BGIv1.0 annot-version=v1.0 MRKIGGLDLCNAMVNGCCCMKSVKKALRLFVSVSQQGYILKKSTCLKVISSLEYDMAKYVQLAETMLNLEADYSCMLCSRIIGKLSRAGEMEKARYVLHL LDRREMSADLVAYTMMIQGYCRVNQLEEGFKVLDEMKKRGIELEIVTFMVLLDGALKNSDGSRRKQEADDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020295 [exp]	0	1
AT3G62080			SNF7 family protein (.1.2)		Lus10009262 [exp]	5.1	0.7272
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10024315 [exp]	12.6	0.6483
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10002692 [exp]	24.7	0.6666
					Lus10011286 [exp]	48.5	0.6215
AT2G38660			Amino acid dehydrogenase famil...		Lus10043398 [exp]	61.2	0.6429
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10027040 [exp]	76.9	0.6307
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10034326 [exp]	141.3	0.5552
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010105 [exp]	148.0	0.5571
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10036028 [exp]	185.5	0.5412
AT5G52390			PAR1 protein (.1)		Lus10040702 [exp]	204.3	0.5567

Compare expression of checked genes

Lus10020295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.