Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06920 172 / 9e-50 FLA21 FASCICLIN-like arabinogalactan protein 21 precursor (.1) AT5G40940 49 / 5e-06 FLA20 putative fasciclin-like arabinogalactan protein 20 (.1) AT1G30800 47 / 1e-05 Fasciclin-like arabinogalactan family protein (.1) AT4G12950 43 / 0.0001 Fasciclin-like arabinogalactan family protein (.1) AT4G29980 41 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018505 [exp] 424 / 1e-147 AT5G06920 200 / 6e-61 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10039717 [exp] 410 / 2e-142 AT5G06920 192 / 5e-58 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10023390 [exp] 50 / 1e-06 AT1G30800 116 / 2e-31 Fasciclin-like arabinogalactan family protein (.1) Lus10016437 [exp] 47 / 2e-05 AT5G06920 68 / 3e-12 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10038414 [exp] 45 / 7e-05 AT1G30800 117 / 5e-32 Fasciclin-like arabinogalactan family protein (.1) Lus10019675 [exp] 45 / 9e-05 AT5G06920 71 / 4e-13 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10031214 [exp] 40 / 0.0009 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152200 [exp] 221 / 2e-68 AT5G06920 296 / 1e-98 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Potri.008G128200 [exp] 74 / 2e-14 AT5G40940 174 / 7e-51 putative fasciclin-like arabinogalactan protein 20 (.1) Potri.017G111600 [exp] 50 / 1e-06 AT5G40940 216 / 2e-66 putative fasciclin-like arabinogalactan protein 20 (.1) Potri.005G079500 [exp] 48 / 8e-06 AT5G06920 63 / 1e-10 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10020296 pacid=23144177 polypeptide=Lus10020296 locus=Lus10020296.g ID=Lus10020296.BGIv1.0 annot-version=v1.0 ATGTCCGCATTCATTTTTGTTGAAATGAAATCCCACTCCGACTCCCAGGGCAGATATCATCGATCAATGTCAACAGTTCGCCGTCTAACTCAACGATCTT TCTCCTCAAGAACTAAAGAAGCAACCCAAAACTCACTCACTCGCCTAACAATGCAGTCCTTCCAGAGGTGGAAAGCGACCATCTACTTCGCCGCAATCTC TATAGTCCTAGCCTTCACCGCCTTCTCCATAGCACAACTCCACTCCACCGTCAGTACTCCACTCCACCCGCCGCCACCTCCTTCCTCTGCACAGCCGGCG ACGGTTCTCTCCACCAACGCCACACTCTACCTCCAACAAGCCGGATTCTCCATCGCCGCATCCCTCCTCCTAGCAAACCCCGACACCTTCTTCTCCTCCG CAAACTCCACCGTCTTCGCGGTCCAAGACTCTGTCTTGTCCCCTGCCGTCGCCGCATCTCCGCCCGCGTACCCGTCTACCGTACGCGCTGCTCCTAGGTT GCTTCGGAAGCAGCTCCTTCTTTACCACACCTCTCCCGTCAGCCTCCCGATGTCCGAGATTCTCAAACTCCCTCCGGGAACATGCTTTCCCACTCTTGTC AACGGCAAGACCCTAGTCGTCACCAAGATCGACGCCGAGAATCGCGCCGCCGAGATCAACGGCGTCAGGATTTCTCATCCCGACATCGTCATCGAAGGTT CGGTCGTTATCCACGGCGTCCGCCAGCTGTTCTCGTCCATGGACACCGGCAGCGGTCTTATCTCTCCAGCTACCTGCGACGCCGCCGGAAGGAACTCGAG CCTACTCACGGACTCCGTCCACTGGTCCAAGATCGTGCGGTCGCTCAGCTCAAAGGGGTTCGTCGCATTTGCCGTCGGATTGAACTCTGTCCTCGACGGG ATCCACAAAGACTACAAGGACTTGAAATCGGTGACCATATTCAGTCCACCGGATTCCTCCGTCGTCGTCGTAGGTTCTTCGATGGACAGAGTCGTCAGAT TCCACATCGTGCCACGGAGGATTTCCTACAAGGAGCTAATGAATCTGTGCAAAATGACGTCGTCTCCTATAAAGACTCTGCTGCCAGGTCATAACCTGGA GGTGAAACTGAATAATACTATAGCAGCAGCAGCAGGACAATTGACCGTCAATGGAGTCCAGATTATCAGGACTGAGATTTTATCGTCTGATAACTTGGTC GTTCATGCCATTTCGAAAGCTCTCCCGATCGGTTAG
AA sequence Show only first row Show all	>Lus10020296 pacid=23144177 polypeptide=Lus10020296 locus=Lus10020296.g ID=Lus10020296.BGIv1.0 annot-version=v1.0 MSAFIFVEMKSHSDSQGRYHRSMSTVRRLTQRSFSSRTKEATQNSLTRLTMQSFQRWKATIYFAAISIVLAFTAFSIAQLHSTVSTPLHPPPPPSSAQPA TVLSTNATLYLQQAGFSIAASLLLANPDTFFSSANSTVFAVQDSVLSPAVAASPPAYPSTVRAAPRLLRKQLLLYHTSPVSLPMSEILKLPPGTCFPTLV NGKTLVVTKIDAENRAAEINGVRISHPDIVIEGSVVIHGVRQLFSSMDTGSGLISPATCDAAGRNSSLLTDSVHWSKIVRSLSSKGFVAFAVGLNSVLDG IHKDYKDLKSVTIFSPPDSSVVVVGSSMDRVVRFHIVPRRISYKELMNLCKMTSSPIKTLLPGHNLEVKLNNTIAAAAGQLTVNGVQIIRTEILSSDNLV VHAISKALPIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10020296 [exp]	0	1
AT5G38510			Rhomboid-related intramembrane...		Lus10000628 [exp]	2.4	0.9179
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10002712 [exp]	2.4	0.9408
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	5.3	0.9016
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	8.8	0.8938
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10033034 [exp]	9.3	0.9059
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10030053 [exp]	13.0	0.8923
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10042524 [exp]	14.1	0.9037
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	14.7	0.8552
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10018248 [exp]	17.2	0.8640
AT5G14100		ABCI11, ATNAP14	ARABIDOPSIS THALIANANON-INTRIN...		Lus10035195 [exp]	17.5	0.8518

Compare expression of checked genes

Lus10020296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.