Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26790 208 / 1e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13800 172 / 1e-47 FAC19 embryonic factor 19, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 155 / 9e-42 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 136 / 3e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G61990 134 / 1e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G32630 132 / 5e-34 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G21222 129 / 8e-33 protein kinase family protein (.1) AT5G59900 128 / 2e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 126 / 2e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 127 / 3e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005692 [exp] 689 / 0 AT2G26790 469 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020295 [exp] 315 / 8e-109 AT2G26790 74 / 7e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 147 / 4e-39 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 143 / 2e-37 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009465 [exp] 142 / 2e-37 AT1G31840 640 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027914 [exp] 142 / 3e-37 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 142 / 3e-37 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001284 [exp] 140 / 2e-36 AT1G31840 645 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018019 [exp] 139 / 2e-36 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066600 [exp] 216 / 2e-63 AT2G26790 521 / 4e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 146 / 7e-39 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 145 / 8e-39 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 144 / 2e-38 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.003G008900 [exp] 142 / 2e-37 AT2G32630 612 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G032600 [exp] 140 / 4e-37 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 140 / 5e-37 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G069600 [exp] 140 / 8e-37 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 139 / 2e-36 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 138 / 3e-36 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020298 pacid=23144116 polypeptide=Lus10020298 locus=Lus10020298.g ID=Lus10020298.BGIv1.0 annot-version=v1.0 ATGAAGTTCTTCGAAGAAATGAAGGACAATGGGATTGAACCCGATATTATCGTTTATAATGTACTTGTTTCTGGTTTCTCCAGATTAGGTCATACAGCGA GAATCGAAAGGCTTTTAGCCTACATGAAGGATCACGGTATCGAACCTACGAACGATACTTACGGTATTATCATCGATGGGCTGTGCAATGCCGGGAAATT GGAAGACGCCGAAGCGTTCTTCTCCGAGCGGATGAGTGAGAAAGATAGAGGATTGGATCTCTGTAACGCCATGGTTAACGGCTACTGCTGTATGAAAAGC GTCGAAAAAGCGTTTAGACTGTTTGTTTCTGTGTCGCAACAGGGGTATATACTAAAGAAGAGTACTTGTTTGAAGGTTATTTCCAGTTTGGAATACGATA TGGCGAAATACGTCCAGCTGGCGGAGACGATGCTAAATCTAGAAGCGGATTATTCGTGTATGTTATGCAGCAGGATCATCGGAAAGCTTTCTCGTGCCGG AGAAATGGAAAAGGCCAGATACGTACTGCATCTTCTCGATCGGAGAGAGATGAGCGCCAACCTGGTGGCGTACACGATGATGATACAGGGCTATTGCAGG GTGAATCAGCTGGAAGAGGGCTTCAAGGTTCTTGATGAAATGAAGAAACGAGGGATCGAACCGGATATTGTGACATTCACCGTTTTGCTCGACGGGGCGT TGAAGAATTCTGACGGGAGCAGAAGGAAACAGGAGGTGGTTACGAAAGTTCGCGACGAGATGGAGAGAACTAACGTGGAGCCGGATGCTGTTCATTACAC TGTTCTGATAAACAGAAGCGGGAGAGCGAATAATTTGCAGGAAGCTAAAGAGCTTTTTAAGCAGATGGTTGATACAGGGGTGGAACCTGATACTGTTGCA TATACAGCTCTGTTATGCGGATACTACCGTGCTGGAGATATGGAGGGTGCTGGAGTTGTTCTTAATGAGATTTCGGATAAGCAGTTGGCTCGCGACGCTG TTATTGATTCGGTGGTGTTGAAAGGCACGGACGTGCAGTACCGTTGA
AA sequence Show only first row Show all	>Lus10020298 pacid=23144116 polypeptide=Lus10020298 locus=Lus10020298.g ID=Lus10020298.BGIv1.0 annot-version=v1.0 MKFFEEMKDNGIEPDIIVYNVLVSGFSRLGHTARIERLLAYMKDHGIEPTNDTYGIIIDGLCNAGKLEDAEAFFSERMSEKDRGLDLCNAMVNGYCCMKS VEKAFRLFVSVSQQGYILKKSTCLKVISSLEYDMAKYVQLAETMLNLEADYSCMLCSRIIGKLSRAGEMEKARYVLHLLDRREMSANLVAYTMMIQGYCR VNQLEEGFKVLDEMKKRGIEPDIVTFTVLLDGALKNSDGSRRKQEVVTKVRDEMERTNVEPDAVHYTVLINRSGRANNLQEAKELFKQMVDTGVEPDTVA YTALLCGYYRAGDMEGAGVVLNEISDKQLARDAVIDSVVLKGTDVQYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020298 [exp]	0	1
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	3.2	0.7596
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	10.6	0.7553
AT5G50180			Protein kinase superfamily pro...		Lus10035233 [exp]	11.5	0.7123
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	12.0	0.7213
AT4G22840			Sodium Bile acid symporter fam...		Lus10008914 [exp]	12.4	0.6888
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	15.0	0.7351
AT4G17250			unknown protein		Lus10004355 [exp]	16.7	0.6853
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10008650 [exp]	29.1	0.7276
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	42.3	0.6830
AT1G57790			F-box family protein (.1)		Lus10017027 [exp]	50.5	0.6729

Compare expression of checked genes

Lus10020298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.