Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26790 250 / 3e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13800 234 / 8e-69 FAC19 embryonic factor 19, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 150 / 3e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 148 / 8e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 140 / 4e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 134 / 9e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 131 / 7e-33 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 131 / 8e-33 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 130 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61400 130 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005692 [exp] 817 / 0 AT2G26790 469 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020294 [exp] 492 / 8e-174 AT2G26790 207 / 9e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016727 [exp] 139 / 4e-36 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000909 [exp] 139 / 2e-35 AT1G74580 270 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 139 / 3e-35 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004570 [exp] 135 / 3e-34 AT5G59900 290 / 9e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009201 [exp] 130 / 3e-34 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10008185 [exp] 134 / 1e-33 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 133 / 1e-33 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G066600 [exp] 295 / 4e-92 AT2G26790 521 / 4e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G038300 [exp] 159 / 4e-43 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 155 / 9e-42 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G150100 [exp] 154 / 3e-41 AT1G62930 442 / 8e-149 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 150 / 2e-39 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G139300 [exp] 150 / 2e-39 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G166001 [exp] 147 / 4e-39 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G257300 [exp] 148 / 9e-39 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 145 / 5e-38 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 144 / 9e-38 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020299 pacid=23144195 polypeptide=Lus10020299 locus=Lus10020299.g ID=Lus10020299.BGIv1.0 annot-version=v1.0 ATGTGGTTATCGGCGGGTAAGTCCATCTTGTTCTCATATACTCGCGTCAGACAGGCTAAGCTCAGCAGATTCTACGCTGGTGCTCCTGCGCTTTACTTCG GCAATCCGAATTTGTACGAGCCAACTCAAGCTGCGTGTAATTGGCTAGAGCTGAATTGCTCCATAGTCGTTGATCACCTTCACGAACTGAGAAAGGAGCC TTTCCTTGCACTTTCTTACTTTAAACAGGTGAAGGGAGGTGGGTTTCTTCACGATGTTTCAACTTACGCTGCCATGATTAAGATACTGTGTTTCTGGAGC TTGGACAGAAAACTGGATTCCATGCTCGACGAGGTTGTTCAAAATCGAACGGAACTCGGTTTCGAGCTTGTTGATTTGCTGCAGGTTCTATCCGATGATG GCTGTGATGTTATTTCAAAAGTTTTGGATGCGTTGGTTAAACGTCTTGCATTGCTTGAGATATTCGATGAGGCTCAGGATCTTCTTGTACATGTCAAAGA CTTTGGGGTTATCCCGAGCATTTTCACAGTTAATTACCTTATGAAGCGTTTGATTGATTCGAACAGGGCTGATGCTGCAGTAGCGATTTATCTGCAGTTA GAGACGGGCTTCGGATTGAAACCGAATGATTACACTTTCGGCATTGTTGTCAAGGCTTTGTGTAAGAAAGGTAGGTTGGAAGAAGCAGAGACTCTAATCA GGGCAATGGTAGAAAACGGGATGACTCTGACTGCTTTCCTTATCTCGACTTTTATCGAAGGGCTATGCGATCATAATAGCCCGTTTTTGGGGTATAAAGC TTTTCAGAGCTTTATCGAAGCTGAGTTTCCCATTGATGCATACGCGTTTACATCGCTGATTCGAGGGTTCTGTAACGTCAATAAACTAGACGAGGCTAAG GAGGTACTTGTCGAGATGGAAAGGCTCGGATTCGTTCCCGATGTGTATGCTTATGGTCCCGTGATTCACGGGCTATGCAAGGTCGGGAAATTACTCGAAG CGTCGAGTATTCACGACGAGATGCTGTCGAATGGAGTGAAGACGAATTGCGAGGTTGTCGGCTCGATTCTTCAAGGGCTGTCTAATGCAGGCATGGTTTC GAAAGTTTCGAATCTGTTCAAGACCTGTAAAGATACCGGTATGTACCTCGATAAGGTTTGTTATAATATAGTAATGAAGTCCTTCTGCACGTTAGCTGAT GTGGAATCGGCTACCGGTTTACTAACCGAGATGAAAGAGAAGCGTATGGTTCCCGATCTGGTTAACTACACGACGTTGATCGATGGCGTGAGTAGTGGGT TAATGTAA
AA sequence Show only first row Show all	>Lus10020299 pacid=23144195 polypeptide=Lus10020299 locus=Lus10020299.g ID=Lus10020299.BGIv1.0 annot-version=v1.0 MWLSAGKSILFSYTRVRQAKLSRFYAGAPALYFGNPNLYEPTQAACNWLELNCSIVVDHLHELRKEPFLALSYFKQVKGGGFLHDVSTYAAMIKILCFWS LDRKLDSMLDEVVQNRTELGFELVDLLQVLSDDGCDVISKVLDALVKRLALLEIFDEAQDLLVHVKDFGVIPSIFTVNYLMKRLIDSNRADAAVAIYLQL ETGFGLKPNDYTFGIVVKALCKKGRLEEAETLIRAMVENGMTLTAFLISTFIEGLCDHNSPFLGYKAFQSFIEAEFPIDAYAFTSLIRGFCNVNKLDEAK EVLVEMERLGFVPDVYAYGPVIHGLCKVGKLLEASSIHDEMLSNGVKTNCEVVGSILQGLSNAGMVSKVSNLFKTCKDTGMYLDKVCYNIVMKSFCTLAD VESATGLLTEMKEKRMVPDLVNYTTLIDGVSSGLM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020299 [exp]	0	1
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10007793 [exp]	10.7	0.8986
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10033928 [exp]	12.9	0.8966
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10017684 [exp]	13.2	0.8906
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10004730 [exp]	14.5	0.8966
					Lus10027385 [exp]	20.3	0.7971
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10009816 [exp]	24.7	0.8901
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10018496 [exp]	25.5	0.8885
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	28.2	0.8931
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	29.5	0.8798
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10012798 [exp]	31.5	0.8851

Compare expression of checked genes

Lus10020299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.