Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35910 460 / 8e-151 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) AT1G54440 343 / 1e-108 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT2G32415 149 / 4e-37 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039170 [exp] 1186 / 0 AT5G35910 828 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10005691 [exp] 1044 / 0 AT5G35910 814 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020293 [exp] 805 / 0 AT5G35910 691 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10031563 [exp] 153 / 3e-38 AT2G32415 1039 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10015114 [exp] 152 / 6e-38 AT2G32415 1089 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G038701 [exp] 566 / 0 AT5G35910 846 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.013G062800 [exp] 557 / 0 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.002G229000 [exp] 149 / 3e-37 AT2G32415 1050 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF00570 [flax] [poplar] HRDC HRDC domain CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10020300 pacid=23144182 polypeptide=Lus10020300 locus=Lus10020300.g ID=Lus10020300.BGIv1.0 annot-version=v1.0 ATGGATGAAGATGGGTTCCAGACGGTTTACGGGAGGAATAATAAGAAGAAGAGTAACGTCTGGATTAATCCGAATAGCGGATTAGCTGCGGCGGGGAGCT CGGGTGGTGAGATAGGAGTTACGGTTGCTGATAAGAAGGGGAATGTTGGCGGGAAGGCGAAGGTTCCGTTTCACATTCCGTCGATTAGGAGGCCGCAGGA AGAGTATAGTATCTTGGTGAATAATTCGAACCAGGCGTTTCAGCATGTCTGGTTGGAGAAGAGTGCTGAAGGGACGCGGTTTGTTCATCCCTTGATATTG ATCATGTGTTATTATGCTTCGTGGTGTCTGGCTGTTCAAATTCTCTTAGATGCTGGTTATGTTGAACCGGTGGTTCCACCTGCGGTAGAGAGTACCCCAT TCAAGCTCGTGGAGGATCTCAAGGATTTGAAGGAGATGGCAGCTAAACTGCGTGCTGTCAATGAATTTGCGGTTGATTTGGAACACAATCAATATCGTTC TTTTCAAGGATTAACATGCCTGATGCAAATTTCAACAAGAACTGAGGATTTCATTGTTGACACTTTAAAGCTCCGAATACACGTTGGTCCTCATCTCAGG GAACTTTTCAAGGATCCGACCAAAAAAAAGGTCCTGCATGGAGCAAATTCAGACATATTGTGGCTTCAAAGGGACTTTGGAATATATGTGTGCAATATGT TTGATACAGGACAGGCCTCCCGAGTACTGAAAATGGAGAGGAACAGTTTGGAGCATCTTTTGCATCATTTTTGCGGAGTTTTTGCTAACAAAGAATACCA GAATGCAGATTGGAGACTACGTCCTCTCCCTGTTGAGATGGTTAGGTTGCCAAGTGCCAACTTCAGTGCTCATCAGCTTGCGATTGTTTCAGGCCTCTAT GAATGGAGAGATGCTATAGCCCGTACAGAAGATGAGAGTACAGGTTATATATTACCAAACAAAGTTCTGCTTGAAATCGCCAAGCAGATGCCTGTAACAA CCAGCAAGTTGCGTCGCGTACTCAAATTGAATCACCAGTATATTGAGCGGCATCTCAGTTCTGTCGTTCAAGTTGTTCGACATCAAATGCAAAATGCTGC TGCATTTGAAACTGCTGTTCAGCAATTGAAGGAAGTGGCATTGGAAATGGCCTCGCGACGAGATAACGTTGAAGCAAATGATGATTCTAAAGTTCTCGAT ACACAAACTGCCGCTGGCATAGAAGCTCCAAATGTTGTAGCACAAGAAAACATGCCAGTCAGTTCTTCACAGGCTGAGAAGAAACATTTGGACGGTGCAG CCAATGTCAATCATGTTCATGAAAATGGGAAAACAAAGTCTTCTACATCGAAGAACCAGAGTGCCGACACGTTTCCTGCTGCAAAGGTTACAGGAGCTAC AGTTCAGGTGCAAAAGAAGCAAGGCGGCATCTTCGGATCAATGCTTGGAAATGCAGTACCGAAGAAGCGAGCTGATACAGATAATAAGGATAAGAGAGAC ACTACGTTAGAAAAGATCAAATCGTCGGTCAGTCTTCCATTCCACTCATTTGCAGGAGGAAACGAGCAACAGCCAAAACCAGCCGTGGAAGAAGCGACAG CTAGGATTTCGCAAGATGCACATCCTGAAAAATCTCCAGCTGCAAAGGACATCATAATGTTGGACTCGGAGTCGAGCAACGAAGCACTGGGTGATTCGGA AATGAAGGAATCAGCGGAGTCTCCATCCAAAGGAGACAATGAAACTGAACCGGTTACTCTATCTGATCTGTCTTCGAGCTTCGACAAGTGCTGCCGGTCT ATAGACAAGAAGAGTGGAGTTGATAAGTTTACTCAGGGATCAAGCGATGTGCCCCAGTTGAAGCCGTTTGATTACGCTGCTGCGGCCGAGAAGCTGCTGA AGTTTGAGAAGGAGCCCAAGAAACCAGACAGGGCCGTCGATGGGAAGAAATCGTCGTCGTCGGTGGATCAGTCGTGTAAGAAGAGAAATTCGGCCGGTGG TGGAAGCGTTGAGAAAGACGACGATGGGGATGAATTCCGACAGGGTAGAAGGCGGCAGGCTTTTCCGGCCAGCGGCAACCGTAGCTTAAGCTACCGTTAA
AA sequence Show only first row Show all	>Lus10020300 pacid=23144182 polypeptide=Lus10020300 locus=Lus10020300.g ID=Lus10020300.BGIv1.0 annot-version=v1.0 MDEDGFQTVYGRNNKKKSNVWINPNSGLAAAGSSGGEIGVTVADKKGNVGGKAKVPFHIPSIRRPQEEYSILVNNSNQAFQHVWLEKSAEGTRFVHPLIL IMCYYASWCLAVQILLDAGYVEPVVPPAVESTPFKLVEDLKDLKEMAAKLRAVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPHLR ELFKDPTKKKVLHGANSDILWLQRDFGIYVCNMFDTGQASRVLKMERNSLEHLLHHFCGVFANKEYQNADWRLRPLPVEMVRLPSANFSAHQLAIVSGLY EWRDAIARTEDESTGYILPNKVLLEIAKQMPVTTSKLRRVLKLNHQYIERHLSSVVQVVRHQMQNAAAFETAVQQLKEVALEMASRRDNVEANDDSKVLD TQTAAGIEAPNVVAQENMPVSSSQAEKKHLDGAANVNHVHENGKTKSSTSKNQSADTFPAAKVTGATVQVQKKQGGIFGSMLGNAVPKKRADTDNKDKRD TTLEKIKSSVSLPFHSFAGGNEQQPKPAVEEATARISQDAHPEKSPAAKDIIMLDSESSNEALGDSEMKESAESPSKGDNETEPVTLSDLSSSFDKCCRS IDKKSGVDKFTQGSSDVPQLKPFDYAAAAEKLLKFEKEPKKPDRAVDGKKSSSSVDQSCKKRNSAGGGSVEKDDDGDEFRQGRRRQAFPASGNRSLSYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35910			Polynucleotidyl transferase, r...		Lus10020300 [exp]	0	1
AT4G31880			unknown protein		Lus10017121 [exp]	15.1	0.8443
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10002437 [exp]	22.0	0.8341
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10006511 [exp]	37.4	0.7931
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10004278 [exp]	66.5	0.7537
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	76.1	0.7765
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10036723 [exp]	77.3	0.7757
AT3G58930			F-box/RNI-like superfamily pro...		Lus10002820 [exp]	86.0	0.7720
AT1G26170			ARM repeat superfamily protein...		Lus10000328 [exp]	109.9	0.7391
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10008003 [exp]	134.2	0.7406
AT5G57120			unknown protein		Lus10001434 [exp]	147.4	0.7307

Compare expression of checked genes

Lus10020300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.