Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36900 312 / 6e-109 ATMEMB11, MEMB11 membrin 11 (.1.2) AT5G50440 290 / 2e-100 ATMEMB12, MEMB12 membrin 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005690 [exp] 455 / 3e-165 AT2G36900 313 / 5e-109 membrin 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062900 [exp] 372 / 2e-132 AT2G36900 304 / 1e-105 membrin 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence Show only first row Show all	>Lus10020302 pacid=23144104 polypeptide=Lus10020302 locus=Lus10020302.g ID=Lus10020302.BGIv1.0 annot-version=v1.0 ATGGCGATGCCGATTCAAGGAGGAGGAGGTGGAAGGACGTTGTCGGAGATCTACCAGAGTGCGAAGAAGCTGCTGCTGAAAGCTCGAGACGGGATCGAGA GAGTTGAGCGGCTCGAGAGCTCCACCTCTAATGGCGGTTTGGATTCACCCGAGCTCTCCTTCGCTGTCAAGAAGGATATCTTCCAGATCCAGTCCCTTTG CGCCGAGATGGATCGTCTATGGCGCTCCATCGCTTCCAAACCCCAGCGCGATCTCTGGAAACGAAAGGTGGAGCAAGTAGCAGAAGAGGCTGAATCTTTG AAAGAAAGTCTGGATCGGTACGTCGCGAGGAACCAAAGACGAACGAAGGAGGCACAAGATAGAGCAGAGTTGCTAGGGAGAGCGAATGGGGATTCATCTC ATGTATTGAGAATATTCGATGAGGAAGCGCAGGCAATGCAGTCGGTCCAAAACTCGAAACGGATGCTGGAAGATTCTTTGTCCACAGGGACAGCTATCCT TGTGAAGTATTCCGAACAAAGGGAACGTTTGAAGAGGGCACAAAGGAAAGCTCTCGATGTGCTGAACACCGTGGGACTCTCCAGCTCGGTGCTGAGGCTG ATCGAGCGACGAAACCGGGTCGATACATGGATCAAGTACTTCGGAATGGGCGCTACGATCATAATCCTCTACTTCTTCATCTCCTGGAGAGGTTGA
AA sequence Show only first row Show all	>Lus10020302 pacid=23144104 polypeptide=Lus10020302 locus=Lus10020302.g ID=Lus10020302.BGIv1.0 annot-version=v1.0 MAMPIQGGGGGRTLSEIYQSAKKLLLKARDGIERVERLESSTSNGGLDSPELSFAVKKDIFQIQSLCAEMDRLWRSIASKPQRDLWKRKVEQVAEEAESL KESLDRYVARNQRRTKEAQDRAELLGRANGDSSHVLRIFDEEAQAMQSVQNSKRMLEDSLSTGTAILVKYSEQRERLKRAQRKALDVLNTVGLSSSVLRL IERRNRVDTWIKYFGMGATIIILYFFISWRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10020302 [exp]	0	1
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	5.5	0.8448
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	6.6	0.8242
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019502 [exp]	7.2	0.7900
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003977 [exp]	7.3	0.8419
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10035322 [exp]	7.3	0.8217
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10019349 [exp]	8.5	0.8191
AT5G12240			unknown protein		Lus10036054 [exp]	9.2	0.7304
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	11.9	0.8244
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10043394 [exp]	12.0	0.8074
AT4G08230			glycine-rich protein (.1.2)		Lus10024100 [exp]	12.2	0.8227

Compare expression of checked genes

Lus10020302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.