Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03770 755 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G14210 422 / 2e-136 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 389 / 4e-124 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 341 / 6e-106 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 311 / 4e-95 Leucine-rich repeat protein kinase family protein (.1) AT4G39110 173 / 1e-44 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 171 / 4e-44 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 167 / 1e-42 Malectin/receptor-like protein kinase family protein (.1) AT5G39000 165 / 5e-42 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 163 / 1e-41 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005689 [exp] 1275 / 0 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 557 / 0 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 557 / 0 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10032058 [exp] 475 / 2e-156 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 470 / 7e-155 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 457 / 2e-149 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 409 / 2e-131 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030785 [exp] 382 / 1e-121 AT1G14390 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013262 [exp] 376 / 2e-119 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G039000 [exp] 883 / 0 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 826 / 0 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 630 / 0 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 468 / 2e-154 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G333300 [exp] 445 / 2e-145 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 428 / 9e-139 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 417 / 9e-135 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.009G120400 [exp] 176 / 1e-45 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.001G405500 [exp] 170 / 7e-44 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.015G061700 [exp] 167 / 6e-43 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10020303 pacid=23144151 polypeptide=Lus10020303 locus=Lus10020303.g ID=Lus10020303.BGIv1.0 annot-version=v1.0 ATGGAGCTCCACATTTCTGCTGCCATACTGATCATCTTGCTCTCGGTTAATCTCGCAAACGGACTCCAGCGCTCCTCCGAATTCCAAACCCTCATCAGGA TTCAGAAGCTGCTCAACTACCCACCTGTCTTACAAAGCTGGAATTCCACCACAGATTTCTGCAGCAACCCGGATCGAAACACTCCTTACGCAACCGTCGT CTGCTACCAGAACAGCATAACTCAGCTCCACATCATCGGCGACATAGGGGGAAGTTCCTCATCCAGACCATCTCTGCTCCCCAAGAACTTCTCCATTGAA TCATTTGTCACCACTCTGGTCACCCTCCCCAATCTGAAGGTACTCACACTCTCTTCGCTCGGCTTGTGGGGCCCGCTGCCTGGCAAAATCGGACGTTTGT CGTCGTTGGAGATACTTAACGTGAGCTCCAATTTTCTCTATGATGCTATTCCTGGAGAGCTGAGATTTCTCTCTAGTTTACAGTCGCTTGCCCTTGACGA CAACATGTTTTCGGGGGTTATACCGGACTGGATCGGTTCGAAACTCCTTGGTCTGGCGGTTCTTAGCATTAGGAAGAACATGTTCAATGGTACATTGCCT GATTCGTTTGTTAATTTGGTGAACCTGAGAGTTCTTGCACTCTCACACAACTATTTCCATGGTGAAGTCCCCAGTCTCAGCCGGTTGACGAACCTGCAGG TACTCGATCTCGAAGACAACGATTTCGGGACCGAGTTCCCCAAGCTGGGGAACAAGCTGGTCACTTTGGTACTGAGCAAGAACAAGTTTAGGGATGCACT CCCATCTGAAATCAGCTCCTTCTGCCAGCTGGCAAAACTCGATGTCTCTGGGAACAACTTCGTGGGACCGTTTCCACCGTCGTTGCTTGCGTTGCCTTCC ATTGCCTACTTGAATATTGCAGGAAACAAGCTGACTGGAAAGCTGTTTGAGAATCAGTCTTGTGGTACTCAACTAGAGTTTGCTGACTTGTCATCCAACT TTCTGACTGGACATCTGCCCACGTGTCTTCACCAGAAAACTGTCCTGGCTAATGGGAACTGCCTCAATGATGAAGGTCCTCAGAATCCGGTTTTGTTCTG TCGAAACGAAGCGTTGGCTGTAGGTGTTATCCCGGCGATGAAGAAGAGTAGTGGCGAAGGAAGCTCGAATGCAGTAATTATTGCTTTGGGTGTGATTGGA GGGGTTGTTGGAGGGATTGCACTTGCTGCTTTGGGTTTCTTGCTGGTCAAGAAAGTGAATTGTAGCTCCGGGATCGGACTCGAGAGGCATTCGAAGACGA GGACGATTTTCGAGAATGCATCAGTAACTAGTTATCCATCCCAGTTGCTCCAAGATGCAAGGTTAATATCTCAAACGATGAAACTAGGAACACTTGGAGT ACCAGCTTACCGAACCTTTTCGTTGGAAGAGATCGAAGATGCAACGAACAACTTCGAATCGTCTGCTTTCATCGGTGAAAGCTCTCAAGGACAGATGTAC AAAGGTAGGCTTAAGGATGGTTCTTTCGTTGCGATCAGATGCATGAAGATGAAAAATGCTCACAGCACTCAGACATTCACTCGCCATATAGAGCTCATCT CAAAGCTCAGGCACAGACATCTAGTCAGTGCCCTCGGACACTGCTTCGAGTGCTACTTGGACGATTCGACTGTCAGCAGAGTGTTCCTCGTTTTCGAACA TGTACAGAACGGGAAGAATCTAAGGAGCTGGGTCACTGAGAGACATTGCAGGCAAAAGCTCAACTGGACTCAACGGCTAACAGCAGTGATCGGAGTGGCG AAAGGAATGCAGTTTCTTCATACGGGGATCGTTCCAGGCGTATGTGGAAACAATCTGAAGATAACAGACGTTCTACTCGATCAGAATCTTGTCTCGAAAA TCGGCAGCTATAACTTGCCTTTACTAGCTGACGTCACTGGACAGATTGGACACAGAACTTCTTCAGCTGCCGGTTCGAAGGATCCTGCAAGGTTTGTTTC ACAATGTCACAACATAGTAGATGATGTTCACGACTTCGGCATCATACTGCTGGAGATCATCGTGGGGAGGCCGTTGGGATCTCGAATCGAAGTCGATGCT CTAATAGAACAACTGCGGGCTGTGGTAGCGCTAGACGGAGTAGCGAGGAGGGGCATGGTGGATCGACACGTTCGAAAGGGATGCTCGAACCAGTCGGTGA AGACGGCGATGGAGATCTGCGTGAGGTGTCTCAGCAAGAACCGTGGAGAAAGGCCTTCTTTGGAAGACGTGCTGTGGAACTTGCAGTTCGCCGCTCAGGC GCAGAGCGGCGAAGTGTCTCCTTCCGCCCCATTCAATGTTATCTGA
AA sequence Show only first row Show all	>Lus10020303 pacid=23144151 polypeptide=Lus10020303 locus=Lus10020303.g ID=Lus10020303.BGIv1.0 annot-version=v1.0 MELHISAAILIILLSVNLANGLQRSSEFQTLIRIQKLLNYPPVLQSWNSTTDFCSNPDRNTPYATVVCYQNSITQLHIIGDIGGSSSSRPSLLPKNFSIE SFVTTLVTLPNLKVLTLSSLGLWGPLPGKIGRLSSLEILNVSSNFLYDAIPGELRFLSSLQSLALDDNMFSGVIPDWIGSKLLGLAVLSIRKNMFNGTLP DSFVNLVNLRVLALSHNYFHGEVPSLSRLTNLQVLDLEDNDFGTEFPKLGNKLVTLVLSKNKFRDALPSEISSFCQLAKLDVSGNNFVGPFPPSLLALPS IAYLNIAGNKLTGKLFENQSCGTQLEFADLSSNFLTGHLPTCLHQKTVLANGNCLNDEGPQNPVLFCRNEALAVGVIPAMKKSSGEGSSNAVIIALGVIG GVVGGIALAALGFLLVKKVNCSSGIGLERHSKTRTIFENASVTSYPSQLLQDARLISQTMKLGTLGVPAYRTFSLEEIEDATNNFESSAFIGESSQGQMY KGRLKDGSFVAIRCMKMKNAHSTQTFTRHIELISKLRHRHLVSALGHCFECYLDDSTVSRVFLVFEHVQNGKNLRSWVTERHCRQKLNWTQRLTAVIGVA KGMQFLHTGIVPGVCGNNLKITDVLLDQNLVSKIGSYNLPLLADVTGQIGHRTSSAAGSKDPARFVSQCHNIVDDVHDFGIILLEIIVGRPLGSRIEVDA LIEQLRAVVALDGVARRGMVDRHVRKGCSNQSVKTAMEICVRCLSKNRGERPSLEDVLWNLQFAAQAQSGEVSPSAPFNVI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03770			Leucine-rich repeat protein ki...		Lus10020303 [exp]	0	1
AT3G03770			Leucine-rich repeat protein ki...		Lus10005689 [exp]	1.0	0.9151
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	2.8	0.8991
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10010513 [exp]	4.2	0.8770
AT3G13980			unknown protein		Lus10037659 [exp]	7.7	0.8101
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	7.9	0.8298
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	11.0	0.8741
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	12.2	0.8678
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10021582 [exp]	12.2	0.8220
AT3G59110			Protein kinase superfamily pro...		Lus10001423 [exp]	12.7	0.8524
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10009984 [exp]	15.9	0.8087

Compare expression of checked genes

Lus10020303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.