Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08680 322 / 3e-102 ZIGA4, AGD14 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) AT4G13350 186 / 1e-51 NIG NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) AT4G32630 177 / 4e-48 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) AT5G54310 76 / 2e-14 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 64 / 2e-11 AGD15 ARF-GAP domain 15 (.1) AT3G07940 62 / 4e-10 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G05330 61 / 8e-10 AGD13 ARF-GAP domain 13 (.1) AT4G21160 57 / 2e-08 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT3G53710 56 / 6e-08 AGD6 ARF-GAP domain 6 (.1.2) AT2G37550 54 / 1e-07 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005686 [exp] 942 / 0 AT1G08680 446 / 9e-149 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10017729 [exp] 221 / 1e-63 AT4G13350 457 / 3e-153 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10022113 [exp] 181 / 2e-48 AT4G32630 249 / 2e-72 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Lus10033090 [exp] 110 / 2e-25 AT4G13350 338 / 4e-108 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10027249 [exp] 79 / 5e-16 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 79 / 3e-15 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 77 / 1e-14 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 76 / 2e-14 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10024165 [exp] 54 / 4e-07 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G068300 [exp] 417 / 5e-138 AT1G08680 499 / 2e-168 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Potri.018G076200 [exp] 215 / 3e-61 AT4G13350 371 / 3e-119 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Potri.018G035000 [exp] 195 / 8e-54 AT4G32630 210 / 2e-58 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.006G246100 [exp] 193 / 3e-53 AT4G32630 224 / 1e-63 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.011G127000 [exp] 80 / 1e-15 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 77 / 1e-14 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 76 / 3e-14 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 68 / 1e-12 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.004G035800 [exp] 69 / 3e-12 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G026400 [exp] 59 / 3e-09 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10020306 pacid=23144080 polypeptide=Lus10020306 locus=Lus10020306.g ID=Lus10020306.BGIv1.0 annot-version=v1.0 ATGGGAAATAGGAAGGAAGAAGAGCGTAACGAGAAGATCATCAGAGGGCTGCTGAAGCTCCCTCCGAATCGTCGTTGCATCAATTGCAATTCCTTGGGTC CGCAGTATGTTTGCACCAACTTCTGGACTTTCGTCTGCATGACTTGTAGTGGCATACACCGTGAGTTCACTCATCGGGTGAAGTCGGTTTCCATGTCGAA GTTCACGTTCCAAGAAGTCGAAGCACTTCAAAACGGTGGTAATCAGCGTGCAAGGGAAATATATTTGAGAGAATGGGACCAAGAAAGGCAGAGGTTGCCT GCTAGCAGTAATAATGATCGGGTGCGTGAATTCATAAAGCATGTATATGTCGATAAAAAGTATGCTGGGACGAAGACGGCTGATAAGCCTCCTAGGGACT TGCAGAGGATAGGAAGCTACGAAGACGAGAGCAGGAGGGCAAGTTCTTATCATTCATTTTCTCAAAGTCCTCCTTACGACTTCCAATATGAAGAAAGGCG TTATGGGAAACAAGGCGCAGTGCTTCGAAGACCTGGCTCAGATCGAGGCATTTCTGTCGGAAAGATGTCTAGTTTTATTTATAGTCCAACTCGATCGACT GATAGAACGTCTGAGGACAGGTTTGCAAATGAAGGATCTGTTTCTAGACTATCCGACTTCTCAGTTTCTAGCGGAGGCGATTTAGTTAGGCCCGGATCTG GTTTTGAATCTCCAAATTTTCAAAAGGGAAGTGGAGGTAATAGTCCATCCCCGCAGATCCTAGGAAATGCTCCAGGGGAGGGTGTGCCGCATCAAATTGT ACATTCATCTCCGGAGGCCGACTTTAGAAGGGAAAGCAACCAGATGGCACAACCACAGAGAACAATGTCTTTAGTAGGCAAAGGGACACCAGCCGTCAAT CCGTTATCTCATAGGTCCAACAGTTTGCCTACCCTACTCGATGATCTCCCAGAACCTGAGCAAGCCGCTTCCCATGGAAACTTCGGATTTGCCAAGCCCC CAGCTCTCCCCCCATCAAACCATTCTGGAAATGCCCCCATTGATCTGTTCCAATTACCCTCATCACCCGGTCCTCCCCTTGACTTCTTCAATGGATCTCA ATTACAGCCACCATCTAAAAACATGGATAAACTTCCTCAAACTTTCCAGCCTTCCACATTGGATTTGTTTTCTGGGTTTGATCAGAATCAACCAGTTGCT ACTGCTGATAAAATCCCACCAGATCCGGTGATCCCTGAAAATGGAGGATGGGCTACTTTTGATGTACAGACGTGGAATGCCTTCGATAATTCTGCCGTGC CCTTCCCTATTGAGCACATGCAGCAATTTAGTGAACCAAAGCTTCATGCATACAATCCTTTGACGGCTCTTGATATGCATAAAGACGGTACAAGAAGCGA TACATATTTCCAACCCTCGGCTCCTAACAGCTCATCTCATCCAGTGCACCCTATGATGTTCTTGGACATGGCTTCTTTGCAATCTGCACTGCCAAACGAC CATTTATCATCAAGCTTCATCGTCGATGCATCTCATTCATGGTTACCCCAAGACCCTGTGATGAATTACATGCCTACCGCTGCTTTGCAAGGTGGCTTAC CATACGCTCCTGAATCGGCTCCAAGTCCTCCATTAGGGTCCATGCCCGCACAAGGTCCAGTCGCCTCCATCGGAGGAAACCCATTTGCGTAG
AA sequence Show only first row Show all	>Lus10020306 pacid=23144080 polypeptide=Lus10020306 locus=Lus10020306.g ID=Lus10020306.BGIv1.0 annot-version=v1.0 MGNRKEEERNEKIIRGLLKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTFQEVEALQNGGNQRAREIYLREWDQERQRLP ASSNNDRVREFIKHVYVDKKYAGTKTADKPPRDLQRIGSYEDESRRASSYHSFSQSPPYDFQYEERRYGKQGAVLRRPGSDRGISVGKMSSFIYSPTRST DRTSEDRFANEGSVSRLSDFSVSSGGDLVRPGSGFESPNFQKGSGGNSPSPQILGNAPGEGVPHQIVHSSPEADFRRESNQMAQPQRTMSLVGKGTPAVN PLSHRSNSLPTLLDDLPEPEQAASHGNFGFAKPPALPPSNHSGNAPIDLFQLPSSPGPPLDFFNGSQLQPPSKNMDKLPQTFQPSTLDLFSGFDQNQPVA TADKIPPDPVIPENGGWATFDVQTWNAFDNSAVPFPIEHMQQFSEPKLHAYNPLTALDMHKDGTRSDTYFQPSAPNSSSHPVHPMMFLDMASLQSALPND HLSSSFIVDASHSWLPQDPVMNYMPTAALQGGLPYAPESAPSPPLGSMPAQGPVASIGGNPFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	0	1
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	1.7	0.8570
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	4.5	0.8512
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	4.6	0.8509
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10003684 [exp]	4.6	0.8402
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	5.0	0.8409
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	5.5	0.8407
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	5.7	0.8335
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	9.5	0.8231
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	11.0	0.8428
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	11.7	0.8057

Compare expression of checked genes

Lus10020306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.