Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33110 531 / 0 MATE efflux family protein (.1.2) AT1G33100 509 / 3e-179 MATE efflux family protein (.1) AT1G33090 500 / 2e-175 MATE efflux family protein (.1) AT1G33080 499 / 3e-175 MATE efflux family protein (.1.2) AT5G65380 368 / 6e-124 MATE efflux family protein (.1) AT5G10420 342 / 1e-113 MATE efflux family protein (.1) AT5G44050 336 / 3e-111 MATE efflux family protein (.1) AT4G00350 334 / 7e-110 MATE efflux family protein (.1) AT5G17700 332 / 1e-109 MATE efflux family protein (.1) AT1G47530 327 / 1e-107 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003869 [exp] 681 / 0 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10002645 [exp] 369 / 4e-124 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 367 / 3e-123 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 362 / 3e-121 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 358 / 2e-120 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 333 / 6e-110 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 330 / 2e-108 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042344 [exp] 328 / 8e-108 AT1G47530 521 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 327 / 8e-108 AT1G47530 665 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G069700 [exp] 616 / 0 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.013G069600 [exp] 410 / 3e-140 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 404 / 6e-138 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.013G069250 [exp] 395 / 1e-134 AT3G03620 491 / 6e-171 MATE efflux family protein (.1) Potri.007G010200 [exp] 386 / 6e-131 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.015G139400 [exp] 378 / 8e-128 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.015G139500 [exp] 375 / 6e-126 AT3G03620 521 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 365 / 2e-122 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 347 / 2e-115 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.019G063500 [exp] 316 / 3e-103 AT3G26590 681 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10020307 pacid=23144206 polypeptide=Lus10020307 locus=Lus10020307.g ID=Lus10020307.BGIv1.0 annot-version=v1.0 ATGGCGGGCGAAGATGTCAACCAGAAGCTTTTGGCAAAAACCGAGTCGTCAGAGGTTGAAGAAGTAACCTTGACGGCCAAGGTATGGACGGAGACGAAGA CGATGTGGATTGTAGCTGCCCCAGCCATATTCACCAGGTTTTCAACCTTCGGGATCAATGTTGTCAGCCAGGCTTTTATAGGTCACATAGGGTCAACCGA GCTTGCTGCTTACTCTCTTGTTTTCACTGTCCTATTGAGGTTTTGTAATGGTGTCCTGCTGGGAATGGCGAGTGCATTGGAAACTCTATGTGGCCAATCA TTTGGTGCAAAGCAGTACCACATGCTCGGAGTGTACCTGCAGAGGTCGTGGATCGTTCTGTTCATATGCGCAACGTTAATGCTTCCCATATTGATATTCA CCACTCCAATCCTGGAGCTGTTGGGCCAGGAGCCGTACATTGCAGAAGTTGGAGGGAAGATCTCTCTATGGTTAATCCCTGTGATTTACGCTTCCATTCC ATCCTTCACCTGCCAGATGTTCCTCCAGGCTCAGAGCAAGAACATGATCATTGCCTATCTGGCCGCAGCTACAATGGCGATTCACATCTTCCTTTCCTGG CTGCTGACCGTGAAGTACAAGTATGGGATCCCAGGGGCAATGGCCTCCACGATTTTGGCTTTCTGGATCCCTAACATAGGCCAGCTCTGCTTTGTCATTT GTGGTGGCTGCCGTGAAACCTGGAAGGGTTTCTCTTTCTTGGCCTTTACGGATCTCTGGCCTGTTATTAAGCTCTCTCTGTCCTCTGGCGCCATGCTCTG CCTCGAGCTTTGGTACGGCACGGTACTAGTTCTTCTTACTGGGAACATGCCGAATGCTGAAGTTGCTATTGATGCTCTTGCTATCTGCCAGAACATCAAT GGATGGGAGATGATGATCTCACTTGGTTTCTTGGCAGCTGCCAGCGTGAGGGTCTCGAATGAACTCGGCCAAGGGAACTCCAAAGGTGCCAAGTTCTCAA TCGTCATAACAGTTGCGACCTCGTTCGTCATTGGAGTCGTGCTCTTCGTTGCTTTCTTATTCCTGAGGGGGGAGATTGCGTACCTATTCACTGAAAGTCC CCAAGTGGTCGATGCAGTTGCTGACCTTTCACCATTACTAGCCTTCTCCATTCTCCTCAACAGAATGCTGTTCGGGACACTCCTTCAAACCATCATTCTC ATAGTCATCACCTCCAAAACCGATTGGGAGAAACAGGTTCTCCTAGCTCGAAACCGAGTTAACAGATGGTACGTGCCTTCACTTCCAGAATCCGAAGAGC AGAACTAG
AA sequence Show only first row Show all	>Lus10020307 pacid=23144206 polypeptide=Lus10020307 locus=Lus10020307.g ID=Lus10020307.BGIv1.0 annot-version=v1.0 MAGEDVNQKLLAKTESSEVEEVTLTAKVWTETKTMWIVAAPAIFTRFSTFGINVVSQAFIGHIGSTELAAYSLVFTVLLRFCNGVLLGMASALETLCGQS FGAKQYHMLGVYLQRSWIVLFICATLMLPILIFTTPILELLGQEPYIAEVGGKISLWLIPVIYASIPSFTCQMFLQAQSKNMIIAYLAAATMAIHIFLSW LLTVKYKYGIPGAMASTILAFWIPNIGQLCFVICGGCRETWKGFSFLAFTDLWPVIKLSLSSGAMLCLELWYGTVLVLLTGNMPNAEVAIDALAICQNIN GWEMMISLGFLAAASVRVSNELGQGNSKGAKFSIVITVATSFVIGVVLFVAFLFLRGEIAYLFTESPQVVDAVADLSPLLAFSILLNRMLFGTLLQTIIL IVITSKTDWEKQVLLARNRVNRWYVPSLPESEEQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33110			MATE efflux family protein (.1...		Lus10020307 [exp]	0	1
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018069 [exp]	3.7	0.8950
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	4.2	0.9322
AT2G35490			Plastid-lipid associated prote...		Lus10030987 [exp]	6.3	0.9099
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	7.2	0.9276
AT2G42130			Plastid-lipid associated prote...		Lus10021055 [exp]	7.7	0.9134
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	8.4	0.9018
AT1G50250		FTSH1	FTSH protease 1 (.1)		Lus10012277 [exp]	9.5	0.8950
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	9.9	0.9048
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	9.9	0.9190
AT2G41040			S-adenosyl-L-methionine-depend...		Lus10008815 [exp]	10.6	0.9075

Compare expression of checked genes

Lus10020307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.