Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45400 601 / 0 exostosin family protein (.1) AT3G03650 537 / 0 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT1G74680 470 / 4e-163 Exostosin family protein (.1) AT1G67410 312 / 1e-101 Exostosin family protein (.1) AT2G35100 246 / 8e-76 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 233 / 3e-71 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G34270 206 / 2e-60 Exostosin family protein (.1) AT5G16890 197 / 5e-57 Exostosin family protein (.1) AT5G33290 83 / 1e-16 XGD1 xylogalacturonan deficient 1 (.1) AT5G25820 82 / 2e-16 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005684 [exp] 922 / 0 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10003870 [exp] 719 / 0 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10013627 [exp] 561 / 0 AT3G45400 524 / 0.0 exostosin family protein (.1) Lus10002060 [exp] 482 / 2e-167 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10024214 [exp] 419 / 3e-143 AT1G74680 468 / 3e-163 Exostosin family protein (.1) Lus10015791 [exp] 288 / 7e-92 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 285 / 7e-91 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10036219 [exp] 253 / 3e-77 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10038355 [exp] 249 / 3e-77 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067400 [exp] 658 / 0 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.019G044600 [exp] 643 / 0 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.002G210000 [exp] 507 / 4e-177 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.008G034500 [exp] 301 / 4e-97 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.015G124800 [exp] 254 / 1e-78 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.012G124600 [exp] 247 / 5e-76 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.013G116200 [exp] 212 / 1e-62 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 207 / 4e-61 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 196 / 3e-56 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 149 / 1e-43 AT3G45400 145 / 5e-43 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10020308 pacid=23144098 polypeptide=Lus10020308 locus=Lus10020308.g ID=Lus10020308.BGIv1.0 annot-version=v1.0 ATGGGTTCTTCTGTAGCGAAGAAACTGTTGTTCTGTATGTTCCCGTTCATCTCCGCCGCGGTAATGCTGTCATCATGGGTGTTCGTCGTCCGCTCCTCCT CCGCCGGCCGTCCCAGCTTCCTCGACCTCGCGTTCTTGCCCGCGGTCACCACTCTCTCCGTCGTGGAAACAGAGTCGACGGCGAGGCCTCAACCTTCCCG AGCTCGCACGATCCTCGTCGATCGCGAGATTGCAGGACGGATTGAGAACATTGTGAAGGTCCCCAAATGCAGTGACGGCGGGAAAACACGGCAGCAGAAG CAGCTGAAGGTGTTCATGTACGACATGCCGCCTGAGTTCCATTTCTCGCTATTGGAATGGAAGCCGGAGAAAAATGGTGATGTGTGGCCGGACGTGACAG CTCATATACCGGGATACCCAGGGGGGTTAAACCTGCAGCATAGCATAGAGTACTGGCTAACGCTGGACCTGCTAGCGTCCGAATTCCCGCACATTCCTCG AGCGTCGAGCGCGGTTCGAGTTAGGAACTCGAGCGAGGCGGATGTCGTGTTCGTGCCGTTCTTCTCGTCGCTGAGCTACAACCGGTACTCGAAGGTGGAC TCGCACCAGAAGAAGAGCTGGAACAACCTGCTGCAGGACAAGCTGGTGAGGTACTTAACATCACAAGAGGAGTGGAAGAGGTCCGGCGGGAGGGATCATC TGGTGATGGCTCACCATCCCAACAGCATGCTCAGTGCCAGGATGAAGCTGTGGCCGGCGATGTTCGTGCTGTCCGACTTCGGGAGGTACCCTCCGAACGT GGCGAATGTGGAGAAGGATGTGATTGCTCCTTACAAGCATGTCGTTAAGAGCTACGCCGATGATACGTCGGAGTTTGATACTAGGCCTACTCTGCTCTAC TTCCAGGGAGCTATCTACAGGAAGGATGGTGGACTAGCTAGGCAGGAGTTGTTCTACCTACTCAAAGACGAGAAAGACGTGCATTTCCAGTTCGGAAGCG TGAAAAAGGACGGGATACACAATGCATCAAGAGGAATGCACTCATCAAAATTCTGCCTCAACATAGCAGGAGACACGCCATCGTCAAATCGCCTCTTCGA CGCGATCGCCAGCCACTGTGTCCCTGTGATAATCAGCGACGACATTGAACTGCCCTACGAGGATGTCCTCGACTACTCGGAGTTCTGCATATTCGTCAAG ACCTCTGACGCAGTCAAGGACAAGAAGTTCCTGATAAACTTCATCAGGAGAATCAAGAAGGAAGAGTGGACTAGGATGTGGAACAGACTGAAGGAAGTGG AAAATTTCTTCCGTTTTCAGTACCCTTCGAAAGAAAGGGATGCTGTTCAGATGATTTGGCAGGCTGTAGCTAGGAAAGTTCCTGGTGTGAAGATGAAGAT ACACAAGTCTAGGAGATTCTCAAGGTTTGGCAATGGCAATGGTAATGGTAATGTTATTAAGCCTCGTTATAGTAGAGGCTCGTCGTCTAGACATATACTT ACACCAAAGAACTTCTGGTGA
AA sequence Show only first row Show all	>Lus10020308 pacid=23144098 polypeptide=Lus10020308 locus=Lus10020308.g ID=Lus10020308.BGIv1.0 annot-version=v1.0 MGSSVAKKLLFCMFPFISAAVMLSSWVFVVRSSSAGRPSFLDLAFLPAVTTLSVVETESTARPQPSRARTILVDREIAGRIENIVKVPKCSDGGKTRQQK QLKVFMYDMPPEFHFSLLEWKPEKNGDVWPDVTAHIPGYPGGLNLQHSIEYWLTLDLLASEFPHIPRASSAVRVRNSSEADVVFVPFFSSLSYNRYSKVD SHQKKSWNNLLQDKLVRYLTSQEEWKRSGGRDHLVMAHHPNSMLSARMKLWPAMFVLSDFGRYPPNVANVEKDVIAPYKHVVKSYADDTSEFDTRPTLLY FQGAIYRKDGGLARQELFYLLKDEKDVHFQFGSVKKDGIHNASRGMHSSKFCLNIAGDTPSSNRLFDAIASHCVPVIISDDIELPYEDVLDYSEFCIFVK TSDAVKDKKFLINFIRRIKKEEWTRMWNRLKEVENFFRFQYPSKERDAVQMIWQAVARKVPGVKMKIHKSRRFSRFGNGNGNGNVIKPRYSRGSSSRHIL TPKNFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45400			exostosin family protein (.1)		Lus10020308 [exp]	0	1
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	6.4	0.8364
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004322 [exp]	9.9	0.7499
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10031339 [exp]	12.7	0.6967
AT3G27470			Protein of unknown function (D...		Lus10022287 [exp]	14.9	0.7590
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10020786 [exp]	15.4	0.8224
					Lus10039897 [exp]	17.9	0.8082
AT4G04980			unknown protein		Lus10031636 [exp]	22.4	0.7351
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	26.6	0.7743
AT1G79960	OFP	ATOFP14, OFP14	ovate family protein 14 (.1)		Lus10035891 [exp]	27.2	0.7473
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10004371 [exp]	35.0	0.7353

Compare expression of checked genes

Lus10020308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.