Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17820 137 / 4e-40 Peroxidase superfamily protein (.1) AT4G26010 134 / 5e-39 Peroxidase superfamily protein (.1) AT3G03670 127 / 2e-36 Peroxidase superfamily protein (.1) AT5G22410 127 / 2e-36 RHS18 root hair specific 18 (.1) AT1G34510 124 / 2e-35 Peroxidase superfamily protein (.1) AT4G11290 120 / 1e-33 Peroxidase superfamily protein (.1) AT5G64110 120 / 2e-33 Peroxidase superfamily protein (.1) AT1G05260 119 / 2e-33 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G64100 119 / 3e-33 Peroxidase superfamily protein (.1) AT4G16270 114 / 5e-31 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005681 [exp] 230 / 2e-76 AT5G17820 294 / 9e-99 Peroxidase superfamily protein (.1) Lus10005679 [exp] 152 / 6e-46 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10020312 [exp] 158 / 2e-45 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10001324 [exp] 144 / 7e-43 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10013631 [exp] 142 / 4e-42 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10004859 [exp] 131 / 8e-38 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10043010 [exp] 129 / 8e-37 AT5G22410 300 / 9e-101 root hair specific 18 (.1) Lus10018375 [exp] 128 / 1e-36 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10032511 [exp] 125 / 2e-35 AT5G22410 302 / 8e-102 root hair specific 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066800 [exp] 137 / 6e-40 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.015G110200 [exp] 132 / 4e-38 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.007G122451 [exp] 121 / 5e-34 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 118 / 7e-33 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 118 / 7e-33 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 118 / 7e-33 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 118 / 7e-33 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.T045500 [exp] 117 / 1e-32 AT4G33420 441 / 9e-157 Peroxidase superfamily protein (.1) Potri.018G136900 [exp] 117 / 1e-32 AT4G33420 451 / 1e-160 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 117 / 2e-32 AT5G06720 459 / 5e-163 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10020311 pacid=23144075 polypeptide=Lus10020311 locus=Lus10020311.g ID=Lus10020311.BGIv1.0 annot-version=v1.0 ATGTTCGTCGATCCATCCGTCACCGCCGCCCTCCTCCGCATCCACTTCCACGACTGCTTCTCCAAGGGCTGCGACGCGTCCATCCTGATCCACCCGACGC CGCAAAACCCGACCCCACAAAAGACGGCGCCGCCGAACAGGTCCGTACGAGGTTTCAACATCATCGACGCCGTCAAAGGTGCTTTAGAGCTCGCCTGCCC TGCCACCGTCTCGTGCGCTGATGCTATCGCGCTCGCCACGGGTGACGCAGTCGCTCTATCCTCCGGCGGAGGCATTAGGTACTCCGTCCCGACAGGACGG CTCGACGAGCTTCTCTCCACGGTCGCCAACGTCAAGCTGCCGGCGCCGACTCAGTCTGTTTACTTGGCCTTCAGTCAGTTTTTCAGTACGTTCGAGTCCC CTGCACCCAAGTTTAGAGAAAAAAGTCTATCGATAAGCTCGAGCTTGTAG
AA sequence Show only first row Show all	>Lus10020311 pacid=23144075 polypeptide=Lus10020311 locus=Lus10020311.g ID=Lus10020311.BGIv1.0 annot-version=v1.0 MFVDPSVTAALLRIHFHDCFSKGCDASILIHPTPQNPTPQKTAPPNRSVRGFNIIDAVKGALELACPATVSCADAIALATGDAVALSSGGGIRYSVPTGR LDELLSTVANVKLPAPTQSVYLAFSQFFSTFESPAPKFREKSLSISSSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17820			Peroxidase superfamily protein...		Lus10020311 [exp]	0	1
AT5G17820			Peroxidase superfamily protein...		Lus10005681 [exp]	1.7	0.8744
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10024075 [exp]	3.5	0.8675
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	4.6	0.8156
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10029205 [exp]	6.6	0.7603
AT4G05400			copper ion binding (.1.2)		Lus10031070 [exp]	6.7	0.7493
AT3G51710			D-mannose binding lectin prote...		Lus10009088 [exp]	7.7	0.7481
AT3G49070			Protein of unknown function (D...		Lus10027501 [exp]	10.2	0.7479
					Lus10025385 [exp]	13.5	0.7481
					Lus10013622 [exp]	14.5	0.7420
AT4G18950			Integrin-linked protein kinase...		Lus10029277 [exp]	17.9	0.7049

Compare expression of checked genes

Lus10020311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.