Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04170 848 / 0 EIF2 GAMMA, EIF2GAMMA eukaryotic translation initiation factor 2 gamma subunit (.1) AT4G18330 762 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT2G18720 748 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1) AT4G26010 353 / 2e-115 Peroxidase superfamily protein (.1) AT5G17820 344 / 7e-112 Peroxidase superfamily protein (.1) AT3G03670 316 / 4e-101 Peroxidase superfamily protein (.1) AT1G34510 300 / 2e-95 Peroxidase superfamily protein (.1) AT5G22410 262 / 1e-80 RHS18 root hair specific 18 (.1) AT5G51890 249 / 1e-75 Peroxidase superfamily protein (.1) AT1G05260 247 / 5e-75 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005680 [exp] 944 / 0 AT1G04170 846 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10024802 [exp] 929 / 0 AT1G04170 853 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10018734 [exp] 928 / 0 AT1G04170 852 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10005679 [exp] 611 / 0 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10001324 [exp] 458 / 5e-156 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10013631 [exp] 455 / 1e-154 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10005681 [exp] 350 / 6e-114 AT5G17820 294 / 9e-99 Peroxidase superfamily protein (.1) Lus10004859 [exp] 298 / 4e-94 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10043010 [exp] 283 / 2e-88 AT5G22410 300 / 9e-101 root hair specific 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129100 [exp] 880 / 0 AT1G04170 866 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Potri.003G104900 [exp] 862 / 0 AT1G04170 848 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Potri.013G066800 [exp] 399 / 1e-132 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.015G110200 [exp] 284 / 5e-89 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.007G122200 [exp] 264 / 2e-81 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 263 / 9e-81 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 263 / 9e-81 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 263 / 9e-81 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 263 / 9e-81 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 261 / 2e-80 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase CL0617 [flax] [poplar] PF09173 [flax] [poplar] eIF2_C Initiation factor eIF2 gamma, C terminal CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10020312 pacid=23144077 polypeptide=Lus10020312 locus=Lus10020312.g ID=Lus10020312.BGIv1.0 annot-version=v1.0 ATGCTAGCCAAAACATCCATACTTGTGGTGTTCTTCCTTCTATGTAATGTATTCGGTTTGGTTCCCTCGGTGGCCGGTTTACAAGTTGGGTTTTACCGGT CTACTTGCCCACAGGCTGAAACCATCGTGCGGAATTTGGTTCAGAAGCGGTTCGGTACCGACAAGTCCATCGCCGCCGCTCTCCTTCGCATGCACTTCCA CGACTGTTTCGTCAGGGGTTGCGACGCGTCGATCCTAATCGACTCGACTCCTCAAAAGCAATCCGAGAAGTCAGCCGGCCCGAACCAATCGGTAAGAGGA TTCGACCTAATCGATTCGATCAAATCAGCGCTCGAATCCGCATGCCCTTCCAGAGTCTCCTGCGCGGACATCGTCGCTCTAGCCACCCGAGATGCAGTTG CCCTAGCCGGAGGCCCCACGTACCAACTCCCTACGGGACGGCTCGATGGCCTAATCTCGAACGCGGGCAATGTCAACCTCCCTGGTCCAACCGTACCGGT TACTCAAGCATTCAACCAGTTCTTCCGACCCTTGGGCTTCACCCTAACAGAAATGGTCACCCTTTTAGGGGCCCATACGGTTGGTGTGGCCCACTGCACT TTCTTCCAGGACAGGATCTCTAACTTCCGGGGAACGGGTCGTCCCGACCCGGCGATGGACCCGACCTTGGCCGCCAGCCTCCGCCAGACTTGCGCCGGGA GCAACAATCCGACAGCGTTTTTGGACCAGAACACGTCGTTTGTTGTTGATAATTCGTTCTACAGGGAGATTGGTTTGAAGAAGGGTGTGATGCTGATTGA TCAGGCGATTGCTACCGACCGGTCGACGTCGGGGATTGTGTCCGGTTTGGCGAGGAGCGAGGCGGGTTTCCGGCAGGCGGGTTTCCGGCAGTGGTTTGCA GCGGCGATGGTGAAGATGGGGAATCTAGGTGGGAGTGGCGGAGGAGAAATCAGGAAGAGCTGTCGGGTTTTCAATCCGAAGACGGGCGGCAGTGGTGGAC GTCCGTCGGTTCCGCCGCCGAAGAACGGCGGGAAGAAGAATGGAAGCAAGAAAAGTCAACCCGGGAAGAAGGAGGGAAACTTAGGAGCTGTCAAAATGTC GAAGAAAGGTTTGATGGAGCAAGACTTGAGTAAGCTGGATGTATCTCAGCTGCATCCGCTCACTCCTGAAGTGATATCTCGTCAGGCCACTATTAACATA GGCACCATCGGTCATGTGGCGCACGGTAAGTCCACCGTGGTGAAAGCAATATCTGGTGTTCAGACTGTTCGTTTTAAAAATGAGTTGGAGCGTAATATTA CCATTAAGCTTGGGTATGCCAATGCAAAGATATACAAATGTGAAGATGAAAGATGCCCTAGGCCTATGGCGTACAAGGCTTATGGGAGTGGAAAGGAAGA CAGTCCCATGTGTGATGTGCCTGGTTTCGAGGGCGCTAGGATGAAATTGCTCAGACATGTATCCTTTGTAGATTGTCCTGGCCATGATATTCTCATGGCA ACAATGCTTAATGGAGCTGCAATTATGGACGGAGCTCTGCTTCTAATAGCTGCGAATGAAAGCTGCCCCCAACCGCAAACTTCTGAGCATCTTGCTGCTG TTGAAATCATGCGTCTTAAGCACATTATCATTCTTCAAAATAAAGTTGATCTTGTCCAGGAAAATGTTGCTATCAACCAGCACGAAACCATTCAAAAGTT TATCCAGGGAACAGTTGCTGAGGGTGCTCCTGTAGTGCCAATCTCAGCGCAGTTGAAGTACAATATCGATGCCGTCTGCGAATACCTCGTGAAGAAAATT CCAGTTCCTAAGAGGGACTTCAGTTTACCACCCAACATGATTGTGATTCGATCTTTTGACGTGAACAAGCCTGGTTTTGAGGTTGATGACATCAAAGGTG GAGTTGCTGGAGGAAGTATCCTAACGGGAGTTTTGAAGGTCAACCAACGTATCGAGATTCGTCCCGGGATTGTGGTTAAAGACGAGAATGGGAACATTAA GTGCACTCCCATATACACTCGAATCGTCAGTTTATATGCCGAGCAGAACGAACTGCAATACGCCGTGCCAGGAGGTCTCATCGGTGTCGGAACAACAATG GATCCCACATTGACTCGTGCCGATAGGCTAGTAGGACAGGTTCTCGGAGATATTGGGTCGCTCCCGGATGTTTATGACGGGCTCGAGGTGAATTTCTTCC TTCTGCGGCGACTCATTGGCGTGAGGACGAAAGGTTCGGAGAAGCAAGGGAAAGTGTCAAAGCTAGTAAAGGGAGAGATTCTGATGCTCAACATTGGGTC GATGTCGACCGGAGCTCGAGTGCTTGCTGTGAAGAACGATTTGGCAAAGCTGCAACTGACTTCGCCGGTGTGTACGAGCAAAGGAGAGAAGATTGCACTG AGTAGAAGAGTCGAAAAGCATTGGCGGCTGATCGGGTGGGGGATGATTCAGGCTGGAACCACCCTTGAACTCCCTCCTTGCCCTCTTTAG
AA sequence Show only first row Show all	>Lus10020312 pacid=23144077 polypeptide=Lus10020312 locus=Lus10020312.g ID=Lus10020312.BGIv1.0 annot-version=v1.0 MLAKTSILVVFFLLCNVFGLVPSVAGLQVGFYRSTCPQAETIVRNLVQKRFGTDKSIAAALLRMHFHDCFVRGCDASILIDSTPQKQSEKSAGPNQSVRG FDLIDSIKSALESACPSRVSCADIVALATRDAVALAGGPTYQLPTGRLDGLISNAGNVNLPGPTVPVTQAFNQFFRPLGFTLTEMVTLLGAHTVGVAHCT FFQDRISNFRGTGRPDPAMDPTLAASLRQTCAGSNNPTAFLDQNTSFVVDNSFYREIGLKKGVMLIDQAIATDRSTSGIVSGLARSEAGFRQAGFRQWFA AAMVKMGNLGGSGGGEIRKSCRVFNPKTGGSGGRPSVPPPKNGGKKNGSKKSQPGKKEGNLGAVKMSKKGLMEQDLSKLDVSQLHPLTPEVISRQATINI GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMAYKAYGSGKEDSPMCDVPGFEGARMKLLRHVSFVDCPGHDILMA TMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLKHIIILQNKVDLVQENVAINQHETIQKFIQGTVAEGAPVVPISAQLKYNIDAVCEYLVKKI PVPKRDFSLPPNMIVIRSFDVNKPGFEVDDIKGGVAGGSILTGVLKVNQRIEIRPGIVVKDENGNIKCTPIYTRIVSLYAEQNELQYAVPGGLIGVGTTM DPTLTRADRLVGQVLGDIGSLPDVYDGLEVNFFLLRRLIGVRTKGSEKQGKVSKLVKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIAL SRRVEKHWRLIGWGMIQAGTTLELPPCPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10020312 [exp]	0	1
AT4G31980			unknown protein		Lus10038338 [exp]	5.1	0.7561
AT5G05340			Peroxidase superfamily protein...		Lus10008581 [exp]	9.1	0.8344
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	14.1	0.7919
AT4G35160			O-methyltransferase family pro...		Lus10018628 [exp]	17.5	0.7594
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021048 [exp]	25.6	0.7632
AT2G21100			Disease resistance-responsive ...		Lus10027834 [exp]	32.6	0.7774
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	34.5	0.7637
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10042214 [exp]	38.7	0.7575
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10020997 [exp]	38.9	0.7556
					Lus10029354 [exp]	46.7	0.7170

Compare expression of checked genes

Lus10020312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.