Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27870 259 / 6e-80 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 249 / 4e-77 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 249 / 2e-76 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 244 / 2e-75 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 226 / 9e-69 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 225 / 2e-68 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 215 / 1e-64 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G59010 214 / 2e-64 PME61, PME35 pectin methylesterase 61 (.1) AT2G43050 212 / 7e-64 ATPMEPCRD, PME16 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 212 / 1e-63 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005678 [exp] 345 / 3e-119 AT4G33230 159 / 2e-45 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 279 / 3e-88 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 270 / 2e-87 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 255 / 3e-79 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10002976 [exp] 246 / 9e-77 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033399 [exp] 225 / 3e-68 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10008203 [exp] 214 / 2e-64 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015211 [exp] 216 / 4e-64 AT3G05610 420 / 3e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031469 [exp] 215 / 8e-64 AT3G05610 442 / 4e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G134700 [exp] 274 / 1e-86 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 271 / 7e-86 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 241 / 1e-74 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 241 / 2e-74 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 237 / 9e-73 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 235 / 3e-72 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 229 / 1e-69 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 228 / 1e-69 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.008G011200 [exp] 227 / 5e-69 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.006G134800 [exp] 226 / 1e-68 AT1G53840 505 / 1e-173 pectin methylesterase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10020313 pacid=23144167 polypeptide=Lus10020313 locus=Lus10020313.g ID=Lus10020313.BGIv1.0 annot-version=v1.0 ATGGATCGGCTGAGCGCCGCCGTGGCGTACCAAATCTCCTGCCGGGATGGGCTCCGCCGGATCGGGGACGTCAGGACCCGACTCGGAAAACCGATAAAAA TGACGAGCAATTCTTTAGCAATCGTCACCTCAACTTTCAATAGCAGAAATGAAAATTTTCCTCCGATCCAGAACTCCAACACGGGGGGTTCAGAACCGCC CCGACCCGACGCGGTGGTCGCCGCCGACGGTAGCGGTGGGTTCAGGACGATCTCAGAAGCTCTGTCTGCATACAAGTTGAATGAATTCGGACGGTTTGTT GTGTACGTGAAGACAGGGGAGTATGATGAAACCATCACGGTGCGGAAAAATCAGGTTAATGTGACGATCTACGGCGACGGAGCGAATCAGACGGTGGTGT ACGGTTCAAAATCAACGGAATTAGGGATTGCAACTTATGAGACAGCGACGTTGGCGGTGCTCGGAGATGGATTTGTCTGCCGATCGATGTCAATTGAGAA CAGGGCGAAGAGATCGGCGGGAAATTCCTCCGCCGCCGCAATAACGGCGGTGGCGGTTAGAGTTCAGGCGGATAAATCGGCGTTCTACAACTGCACGATC GAAGGAGGTAAATCAGCTCTCTACAGTTTGGCGCACCGTCAATTCTACAGCGAATGCAAGATTTCCGGATCGGGCGATCTGATAATGGGCGACGCAGCGG CAGTGATTCAGGATTCGGAGATTCTGATAAGCGGCGGCGGCGCGGTGACGGCGCAAGGGAGGGCGGAGAGGTACGAGACGACGGGGTTCGTGTTGCAGAA CTGCACGGTGAAGGGGATCAGCGGCGGTAAGATTGTGTTGGGGAGGCCGTGGGGTAAGAGGTCGAGGGCGGTGGTGATGGAGTCGTATCTGGGTGAAAAT GTGGCGGCAGAAGGGTGGAAGGTCACTGCCGGAGGAGGGGAGGTGGCGCCGGCGGAAGAGAAGTATTATTATGCGGAGTTCGGAAACTATGGGCCAGGGT CGGGTACGGATAAGCGGGTTCGGGGCGCGAACGTGCTGAATAAGGATGGGTCGGATGCGGTTCGGTTTGGTCCGAGTTTGTTTATTCAAGGAGATGAGTG GATTTCTCAGGCTGGTGTGCCGTTTCGCGGAGGATTGTGA
AA sequence Show only first row Show all	>Lus10020313 pacid=23144167 polypeptide=Lus10020313 locus=Lus10020313.g ID=Lus10020313.BGIv1.0 annot-version=v1.0 MDRLSAAVAYQISCRDGLRRIGDVRTRLGKPIKMTSNSLAIVTSTFNSRNENFPPIQNSNTGGSEPPRPDAVVAADGSGGFRTISEALSAYKLNEFGRFV VYVKTGEYDETITVRKNQVNVTIYGDGANQTVVYGSKSTELGIATYETATLAVLGDGFVCRSMSIENRAKRSAGNSSAAAITAVAVRVQADKSAFYNCTI EGGKSALYSLAHRQFYSECKISGSGDLIMGDAAAVIQDSEILISGGGAVTAQGRAERYETTGFVLQNCTVKGISGGKIVLGRPWGKRSRAVVMESYLGEN VAAEGWKVTAGGGEVAPAEEKYYYAEFGNYGPGSGTDKRVRGANVLNKDGSDAVRFGPSLFIQGDEWISQAGVPFRGGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27870			Plant invertase/pectin methyle...		Lus10020313 [exp]	0	1
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036890 [exp]	4.7	0.7779
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10030560 [exp]	5.3	0.7755
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Lus10021006 [exp]	6.0	0.7721
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10003862 [exp]	9.4	0.7676
AT3G09950			unknown protein		Lus10039065 [exp]	12.0	0.8334
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10000017 [exp]	25.3	0.7296
AT1G80700			unknown protein		Lus10026096 [exp]	31.1	0.7664
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10029724 [exp]	33.5	0.7841
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10011433 [exp]	39.1	0.7109
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10003801 [exp]	41.5	0.7542

Compare expression of checked genes

Lus10020313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.