Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39660 182 / 2e-53 DOF CDF2, AtDof5. 2 cycling DOF factor 2 (.1.2) AT3G47500 145 / 2e-39 DOF CDF3, AtDof3,3 cycling DOF factor 3 (.1) AT5G62430 136 / 2e-37 DOF CDF1, AtDof5,5 cycling DOF factor 1 (.1) AT1G29160 130 / 1e-36 DOF AtDof1. 5 Dof-type zinc finger DNA-binding family protein (.1) AT1G69570 132 / 6e-35 DOF AtDof1,10 Dof-type zinc finger DNA-binding family protein (.1) AT2G34140 125 / 7e-35 DOF AtDof2. 3 Dof-type zinc finger DNA-binding family protein (.1) AT1G26790 128 / 1e-33 DOF AtDof1,3 Dof-type zinc finger DNA-binding family protein (.1) AT5G60850 103 / 6e-25 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT4G24060 103 / 9e-25 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 102 / 9e-25 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020315 [exp] 628 / 0 AT5G62430 201 / 7e-60 cycling DOF factor 1 (.1) Lus10005677 [exp] 594 / 0 AT5G62430 199 / 3e-59 cycling DOF factor 1 (.1) Lus10034461 [exp] 178 / 1e-51 AT3G47500 331 / 2e-109 cycling DOF factor 3 (.1) Lus10019093 [exp] 175 / 2e-50 AT3G47500 330 / 8e-109 cycling DOF factor 3 (.1) Lus10037167 [exp] 152 / 2e-42 AT5G39660 214 / 5e-65 cycling DOF factor 2 (.1.2) Lus10036760 [exp] 143 / 1e-39 AT5G39660 200 / 1e-60 cycling DOF factor 2 (.1.2) Lus10013905 [exp] 129 / 4e-36 AT2G34140 171 / 9e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10001896 [exp] 128 / 1e-35 AT2G34140 172 / 3e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10010113 [exp] 103 / 1e-24 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040700 [exp] 240 / 4e-75 AT5G39660 154 / 1e-41 cycling DOF factor 2 (.1.2) Potri.013G066700 [exp] 236 / 3e-73 AT3G47500 157 / 2e-42 cycling DOF factor 3 (.1) Potri.017G084600 [exp] 204 / 2e-61 AT5G39660 314 / 3e-102 cycling DOF factor 2 (.1.2) Potri.004G121800 [exp] 197 / 2e-58 AT3G47500 293 / 5e-94 cycling DOF factor 3 (.1) Potri.008G087800 [exp] 195 / 7e-58 AT3G47500 249 / 2e-77 cycling DOF factor 3 (.1) Potri.010G167600 [exp] 180 / 3e-52 AT3G47500 257 / 2e-80 cycling DOF factor 3 (.1) Potri.011G065900 [exp] 125 / 7e-35 AT1G29160 155 / 7e-49 Dof-type zinc finger DNA-binding family protein (.1) Potri.004G056900 [exp] 124 / 3e-34 AT1G29160 186 / 7e-61 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G036400 [exp] 107 / 7e-27 AT3G50410 170 / 2e-52 OBF binding protein 1 (.1) Potri.014G036600 [exp] 105 / 4e-26 AT1G47655 128 / 2e-36 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10020314 pacid=23144178 polypeptide=Lus10020314 locus=Lus10020314.g ID=Lus10020314.BGIv1.0 annot-version=v1.0 ATGGAGCAAGAACAACAATCATCATCAGAAGTAATGAAGAAACCGGACAAGGTGATACCGTGTCCGCGATGCAACAGCATGGAGACCAAATTCTGCTACT TCAACAACTACAATGTCAACCAGCCAAGACACTTCTGCAAGAACTGCCAGAGGTACTGGACAGCTGGCGGCACTATGAGGAACGTCCCCATTGGCGCTGG CCGCCGGAAGAACAAGCATCTCGCCTCTCACTATCGCCAGATCCTCCTCGAGAAGAATCCCAAGGATTCGCCCCCTCCTGCACAACCTGTGGTTAGTAGT CCTTCAGTGGTTCTGAAATTTGGTCATGAAGAAGTTTCACTCCAACAACCACCATTGTGTCAGTCAATGCAGAATTTGCTCAACATTGGATCAGAAAAAT CGAGTCTTGTCGAGCGAAATGGAGGGGAGGAGGCCTCCACGTCCGAGAATGTCACCTCCAGGATCGATCGGGATCCTGAAGGTGACATTGACCGGTCTTC TTCTGAAGATTGGAACACCACTCAACTTAATCCTCCCTTGCAATGCTACCCTGTGACACCATTGATTGTCCCTTGGAACTGGAATGGTGTGGCTCAGTAT CCGAATCAAGTTCAGCTATGTCCTACTTCTGCACCTATGTTGGCTATCCCACCAGGATACTCTCCACCATTACAGTTCCTTCCTGCAGCATCATACCTGA TGTGGACTACTACAACACCTCAAAGCTGTCAATCTCCAACATCTTCCACCAGCTCCCTAGGGAAGCACTCTCGAGACTCGAACGACGAGGATCAGAAAGC GGACGAGGAGAAGACAGTAGTAGTAGTTCCGAAGACACTCAGGATCGATGAGAGTTCCTTATGGTCTACTGCTGCAGCTGCACTGAGTCCAAAACAGGAA CAGCAGCCAAGTAGTGTTCTTGTGAGCAAAGGCAGCATCTTTCGGACTTTCGATGCCAAATCAGATAATGCCAAAGTCGCCCATATTGTTCCTCATTCTT CTGCTCATATACTTGAAGCGAACCCGGCTGCTCTTTCGCGGTCCCTATCGTTCAAGGAAGGTAACTAG
AA sequence Show only first row Show all	>Lus10020314 pacid=23144178 polypeptide=Lus10020314 locus=Lus10020314.g ID=Lus10020314.BGIv1.0 annot-version=v1.0 MEQEQQSSSEVMKKPDKVIPCPRCNSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASHYRQILLEKNPKDSPPPAQPVVSS PSVVLKFGHEEVSLQQPPLCQSMQNLLNIGSEKSSLVERNGGEEASTSENVTSRIDRDPEGDIDRSSSEDWNTTQLNPPLQCYPVTPLIVPWNWNGVAQY PNQVQLCPTSAPMLAIPPGYSPPLQFLPAASYLMWTTTTPQSCQSPTSSTSSLGKHSRDSNDEDQKADEEKTVVVVPKTLRIDESSLWSTAAAALSPKQE QQPSSVLVSKGSIFRTFDAKSDNAKVAHIVPHSSAHILEANPAALSRSLSFKEGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020314 [exp]	0	1
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020315 [exp]	1.0	0.8610
AT1G32090			early-responsive to dehydratio...		Lus10002133 [exp]	5.7	0.7465
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	9.9	0.7386
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10037424 [exp]	11.1	0.7202
AT1G48170			unknown protein		Lus10022781 [exp]	11.5	0.7054
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10024313 [exp]	12.8	0.6863
AT2G02148			unknown protein		Lus10031926 [exp]	20.6	0.6702
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10024022 [exp]	25.1	0.7097
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10003689 [exp]	26.4	0.6492
AT2G02148			unknown protein		Lus10035090 [exp]	27.7	0.6866

Compare expression of checked genes

Lus10020314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.