Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39660 182 / 7e-53 DOF CDF2, AtDof5. 2 cycling DOF factor 2 (.1.2) AT3G47500 163 / 1e-45 DOF CDF3, AtDof3,3 cycling DOF factor 3 (.1) AT5G62430 147 / 8e-41 DOF CDF1, AtDof5,5 cycling DOF factor 1 (.1) AT1G69570 139 / 7e-37 DOF AtDof1,10 Dof-type zinc finger DNA-binding family protein (.1) AT1G29160 132 / 8e-37 DOF AtDof1. 5 Dof-type zinc finger DNA-binding family protein (.1) AT2G34140 129 / 9e-36 DOF AtDof2. 3 Dof-type zinc finger DNA-binding family protein (.1) AT1G26790 126 / 2e-32 DOF AtDof1,3 Dof-type zinc finger DNA-binding family protein (.1) AT5G60850 102 / 2e-24 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT3G55370 102 / 3e-24 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G60200 99 / 1e-23 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005677 [exp] 697 / 0 AT5G62430 199 / 3e-59 cycling DOF factor 1 (.1) Lus10020314 [exp] 610 / 0 AT5G62430 196 / 8e-59 cycling DOF factor 1 (.1) Lus10034461 [exp] 177 / 8e-51 AT3G47500 331 / 2e-109 cycling DOF factor 3 (.1) Lus10019093 [exp] 175 / 1e-49 AT3G47500 330 / 8e-109 cycling DOF factor 3 (.1) Lus10037167 [exp] 150 / 3e-41 AT5G39660 214 / 5e-65 cycling DOF factor 2 (.1.2) Lus10036760 [exp] 139 / 2e-37 AT5G39660 200 / 1e-60 cycling DOF factor 2 (.1.2) Lus10013905 [exp] 130 / 5e-36 AT2G34140 171 / 9e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10001896 [exp] 127 / 5e-35 AT2G34140 172 / 3e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10010113 [exp] 102 / 4e-24 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040700 [exp] 244 / 1e-75 AT5G39660 154 / 1e-41 cycling DOF factor 2 (.1.2) Potri.013G066700 [exp] 239 / 2e-73 AT3G47500 157 / 2e-42 cycling DOF factor 3 (.1) Potri.017G084600 [exp] 205 / 8e-61 AT5G39660 314 / 3e-102 cycling DOF factor 2 (.1.2) Potri.004G121800 [exp] 198 / 2e-58 AT3G47500 293 / 5e-94 cycling DOF factor 3 (.1) Potri.008G087800 [exp] 191 / 1e-55 AT3G47500 249 / 2e-77 cycling DOF factor 3 (.1) Potri.010G167600 [exp] 176 / 4e-50 AT3G47500 257 / 2e-80 cycling DOF factor 3 (.1) Potri.011G065900 [exp] 125 / 3e-34 AT1G29160 155 / 7e-49 Dof-type zinc finger DNA-binding family protein (.1) Potri.004G056900 [exp] 124 / 6e-34 AT1G29160 186 / 7e-61 Dof-type zinc finger DNA-binding family protein (.1) Potri.014G036600 [exp] 103 / 3e-25 AT1G47655 128 / 2e-36 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G034200 [exp] 103 / 3e-25 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10020315 pacid=23144086 polypeptide=Lus10020315 locus=Lus10020315.g ID=Lus10020315.BGIv1.0 annot-version=v1.0 ATGGGAACTGATGGAGGAATGAGGAGCAGTTCTCCTTTCTGCAGAGATCCAGCTATCAAGCTCTTTGGCAGGAAGATTGCTCTCCCTGAGTCACTGATTC AGCCCATCCCTCCTTCCGAGAGTAATGGCTGCAGCAACAATGATGAGAAAGCAAACAAAGAAGGGAATTCTTCCATGGAGCAAGAACAACAATCATCATC AGAAGTAATGAAGAAACCGGACAAGGTGATACCGTGTCCGCGATGCAACAGCATGGAGACCAAATTCTGCTACTTCAACAACTACAATGTCAACCAGCCA AGACACTTCTGCAAGAACTGCCAGAGGTACTGGACAGCTGGCGGCACTATGAGGAACGTCCCCATTGGCGCTGGCCGCCGGAAGAACAAGCATCTCGCCT CTCACTATCGCCAGATCCTCCTCGAGAAGAATCCCAAGGATTCGCCCCCTCCTGCACAACCTGTGGTTAGTAGTCCTTCAGTGGTTCTGAAATTTGGTCA TGAAGAAGTTTCACTCCAACAACAACCATTGTGTCAGTCAATGCAGAATTTGCTCAACATTGGATCAGAAAAATCGAGTCTTGTCGAGCGAAATGGAGGG GAGGAGGCCTCCACGTCCGAGAATGTCACCTCCAGGATCGATCGGGATCCTGAAGGTGACATTGACCGGTCTTCTTCTGAAGATTGGAACACCACTCAAC TTAATCCTCCCTTGCAATGCTACCCTGTGACACCATTGATTGTCCCTTGGAACTGGAATGGTGTGGCTCAGTATCCGAATCAAGTTCAGCTATGTCCTAC TTCTGCACCTATGTTGGCTATCCCACCAGGATACTCTCCACCATTACAGTTCCTTCCTGCAGCATCATACCTGATGTGGACTACTACAACACCTCAAAGC TGTCAATCTCCAACATCTTCCACCAGCTCCCTAGGGAAGCACTCTCGAGACTCGAACGACGAGGATCAGAAAGCGGACGAGGAGAAGACAGTAGTAGTAG TTCCGAAGACACTCAGGATCGATGAGAGTTCCTTATGGTCTACTGCTGCAGCTGCACTGAGTCCAAAACAGGAACAGCAGCCAAGTAGTGTTCTTGTGAG CAAAGGCAGCATCTTTCGAACTTTCGATGCGAAATTGGATAATGCCAAAGTCGCCCATGTTGTTCCTGATTCTTCTGCTCATATACTTGAAGCTAACCCG GCTGCACTTTCGCGGTCCCTCTCGTTCAAGGAAGGTAGCTAG
AA sequence Show only first row Show all	>Lus10020315 pacid=23144086 polypeptide=Lus10020315 locus=Lus10020315.g ID=Lus10020315.BGIv1.0 annot-version=v1.0 MGTDGGMRSSSPFCRDPAIKLFGRKIALPESLIQPIPPSESNGCSNNDEKANKEGNSSMEQEQQSSSEVMKKPDKVIPCPRCNSMETKFCYFNNYNVNQP RHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASHYRQILLEKNPKDSPPPAQPVVSSPSVVLKFGHEEVSLQQQPLCQSMQNLLNIGSEKSSLVERNGG EEASTSENVTSRIDRDPEGDIDRSSSEDWNTTQLNPPLQCYPVTPLIVPWNWNGVAQYPNQVQLCPTSAPMLAIPPGYSPPLQFLPAASYLMWTTTTPQS CQSPTSSTSSLGKHSRDSNDEDQKADEEKTVVVVPKTLRIDESSLWSTAAAALSPKQEQQPSSVLVSKGSIFRTFDAKLDNAKVAHVVPDSSAHILEANP AALSRSLSFKEGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020315 [exp]	0	1
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020314 [exp]	1.0	0.8610
AT1G48170			unknown protein		Lus10022781 [exp]	3.5	0.7763
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	6.5	0.8190
AT1G72660			P-loop containing nucleoside t...		Lus10015662 [exp]	7.3	0.7551
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	8.5	0.7844
AT1G48170			unknown protein		Lus10022783 [exp]	10.0	0.7499
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	12.3	0.7797
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	13.0	0.7792
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10025895 [exp]	16.9	0.7424
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003075 [exp]	19.6	0.7630

Compare expression of checked genes

Lus10020315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.