Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03690 416 / 3e-144 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 390 / 2e-133 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G15050 377 / 4e-128 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 376 / 9e-128 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G03340 370 / 2e-125 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 359 / 3e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 359 / 3e-121 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 352 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT2G37585 301 / 2e-99 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 259 / 1e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005676 [exp] 737 / 0 AT3G03690 454 / 3e-158 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 391 / 1e-133 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 389 / 5e-133 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 368 / 7e-125 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10030084 [exp] 369 / 1e-124 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 368 / 2e-124 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10019477 [exp] 367 / 2e-124 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10033714 [exp] 367 / 6e-124 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 350 / 1e-117 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066200 [exp] 485 / 2e-171 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 381 / 6e-130 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 380 / 3e-129 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 371 / 3e-126 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.004G130300 [exp] 364 / 3e-123 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.011G119600 [exp] 363 / 5e-123 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 362 / 2e-122 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G003300 [exp] 353 / 5e-119 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 335 / 2e-111 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G114800 [exp] 285 / 1e-92 AT1G71070 581 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10020316 pacid=23144090 polypeptide=Lus10020316 locus=Lus10020316.g ID=Lus10020316.BGIv1.0 annot-version=v1.0 ATGGGAATCATAAAGCTCTCAATGATCTCATTCATCCTAATCACCCTCCTCTACTCCTCATTCCTCCTCTACTTCCCTTCCCATCCCTCACTCGCCAAAG CCCCTTCCTCCCCTTCACGCGCAGCCGAAGGCGGCAACGGCAACACCCATCTCGTACTCCACCGGTCATACCCTGTCAGATTCGCCTACCTAATCTCCGC ATCGAGAGGGGATTTCAAGAAGCTGTCCCGCTTAATCAAGGCCCTCTACCACCCTGCCAACTACTACCTGATCCACCTCGACTCCGACGCTCCGCCGCCG GAGCACCAACTGCTGTCGGAGTTCATCTCCGGCGAGGAAGTTTTCAGGGGAATGGGGAATGTCTGGGTTGTGGAGAAGCCGAATCTGGTTACCTACAGAG GGCCGACGATGCTCGCGACTACGCTCCACGCGATTGCGATCCTGCTGAGGAAAGCTAGCGATTGGGATTGGTTTGTGAATCTCAGTGCTTCTGATTATCC TCTGGTTACTCAAGATGATCTGATCGAGGCGTTTTCTGGGTTGCCGAGGAATCTGAACTTCGTTCAGCATAGTAGCCGGTTGGGTTGGAAACTGAATAAG AGGGCGAAGCCAATAATGATAGATCCAGGGTTGTACAGCAACAACAAATCAGAGATCTGGTGGGTTAATAATAAACAAAGGTCTATCCCCACTGCCTTCA AGCTCTATACAGGTTCAGCGTGGACGATCTTATCGAGATCATTCGCGGAGTACACGATCCTAGGCTACGAGAACCTGCCCAGGGCGCTCCTCCTTTACTA CACAAACTTCGTGTCATCCCCGGAGGGCTACTTCCAGACACTGATATGCAACTCCCGCGAGTTCAGAAACACCACGGCCAACCACGACCTCCACTACATT GCGTGGGACACCCCGCCGAAACAGCACCCGAAGCACCTGACCCTGAGGGACTACCGCCGGATGATCCTCAGCGGGCGACCGTTCGCCCGAAAGTTCAAGC AGAACGACCCTGTCCTCGACAGGATTGACCGGGTCCTCCTTAGGAGGTCCCACAACAATGGCAACTTTGGGTATGGAAGGTGGTGTGTTGATAGTGATGG GTTTAGTACTAGTGTTGGTGGGAAGAGGTGGAATGGTGGTGGGTGCCCTACCTTGGTGGATGTTGAGAAGGTTAGGTTTGGGCCTTTGGATCCCGGGCCA GGCTTTAGGAGGCTGAAAAGCCTGCTTGGGAAATTAGTGGCTGGAGATGGCTTCACCAAGCGCCAATGTAGATGA
AA sequence Show only first row Show all	>Lus10020316 pacid=23144090 polypeptide=Lus10020316 locus=Lus10020316.g ID=Lus10020316.BGIv1.0 annot-version=v1.0 MGIIKLSMISFILITLLYSSFLLYFPSHPSLAKAPSSPSRAAEGGNGNTHLVLHRSYPVRFAYLISASRGDFKKLSRLIKALYHPANYYLIHLDSDAPPP EHQLLSEFISGEEVFRGMGNVWVVEKPNLVTYRGPTMLATTLHAIAILLRKASDWDWFVNLSASDYPLVTQDDLIEAFSGLPRNLNFVQHSSRLGWKLNK RAKPIMIDPGLYSNNKSEIWWVNNKQRSIPTAFKLYTGSAWTILSRSFAEYTILGYENLPRALLLYYTNFVSSPEGYFQTLICNSREFRNTTANHDLHYI AWDTPPKQHPKHLTLRDYRRMILSGRPFARKFKQNDPVLDRIDRVLLRRSHNNGNFGYGRWCVDSDGFSTSVGGKRWNGGGCPTLVDVEKVRFGPLDPGP GFRRLKSLLGKLVAGDGFTKRQCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	0	1
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	1.0	0.9615
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10002209 [exp]	2.8	0.9388
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	4.2	0.9408
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	4.2	0.9555
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10038423 [exp]	4.7	0.9206
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	7.3	0.9383
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	7.7	0.9549
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10025800 [exp]	9.2	0.9212
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	9.4	0.9480
AT5G58300			Leucine-rich repeat protein ki...		Lus10035012 [exp]	11.7	0.9039

Compare expression of checked genes

Lus10020316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.