Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17850 278 / 2e-85 Sodium/calcium exchanger family protein (.1) AT5G17860 241 / 3e-71 CAX7 calcium exchanger 7 (.1) AT1G54115 224 / 1e-64 ATCCX4 cation calcium exchanger 4 (.1) AT3G14070 223 / 6e-64 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT1G08960 100 / 3e-22 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005673 [exp] 629 / 0 AT5G17850 346 / 7e-114 Sodium/calcium exchanger family protein (.1) Lus10013634 [exp] 400 / 2e-132 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10001329 [exp] 392 / 2e-128 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10013635 [exp] 249 / 3e-74 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10001330 [exp] 242 / 7e-72 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10015668 [exp] 218 / 1e-64 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10037681 [exp] 219 / 2e-62 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 217 / 1e-59 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10015669 [exp] 94 / 2e-21 AT1G54115 256 / 1e-81 cation calcium exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065900 [exp] 319 / 6e-101 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.019G040301 [exp] 294 / 4e-92 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.013G065800 [exp] 252 / 1e-75 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 241 / 2e-71 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.003G066900 [exp] 205 / 1e-57 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 189 / 1e-51 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G025100 [exp] 92 / 2e-19 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10020318 pacid=23144118 polypeptide=Lus10020318 locus=Lus10020318.g ID=Lus10020318.BGIv1.0 annot-version=v1.0 ATGGGCACTAATCATTCCTCAAAACTCAAACCCTGTATAATCATCTTCCTCAACGCTTCATTCCTCCTACTTACATCTTCCTTCTTCTTTTTCAACCTCA CACAACCTCACTCAAACCCTTCCAATCTCATCCAATCTCAAACCCCAATCACCTGCGAAGAATTCCAAACCCTACCAAGCTCAAACCTCAAATGCACCAC TCTCAAATCAGCCACAAACCCATGTGTCTCCCAAGGCTACATCCCTTACCTGACCTTATTCTACTGCAACTTCACAAACTCCCCCTTCTTAGGCCACACA TTCCTCCTCCTATGGCTCTTGATCCTCTTCTACTTACTAGGCAACACCGCCTCGGAATACTTCTGCTCCTCCTTAGAAGACCTTTCAAGAATTCTGAAGC TTTCCCCCACCATAGCGGGCGTCACTCTCCTCTCCTTGGGGAATGGAGCTCCTGATGTCTTCGCCAGCATCGTCTCGATCGGTCGCGGGACCACGAGAGA CGTTGGATTCAATACCATGGTAGGTGGAGCTTCGTTCGTTGCCTGTGTTGTCGTTGGAAGCATTTGCTTTGCTGTTAAGGGTAGTAGGAAGAAAAATGTT GTTTCAGCAGTTAGGGTTAGCCAGAGTGCTTTTCTTAGAGATGTGTTCTTCTTGCTCTTGGTGCTTGGTTCCTTGGTCGTGACTCTTCTTTTGAAGGAGA TTTTTCTCTGGGGTGCGGTTGGGTTCTCGTTGATGTACGTTGTTTATGTGATCGTCGTGTATATTTCGAGTAGACGGCCACGATCGTGTATCGTTTGTGG TTGTTGCGGTTCCGGTACCCCGGCTTCGAGTTGGGAGAGTGGGTTGAGTATACCTTTGTTGATGAACAAAGAGGATGGAGGTGGTTTGAAATCGATTTGT TGTAATAGTACTAGTACTAGTACGAATACGAGTGTTTGTACTAGTACAAGTACTAGTCCTGGTTCGAGTTGTGAGACTGGGTTGAGTATACCGATATTGA TGAATAAGGAGAATGTGGAGGAAGGAGGGGGAGGAGGAGGAGGGCGCCGGGGCGAAGAGGAAGAGATGAGAAGGTGGTGGTACAATGTGAGGGAATCGCG ACAATGTAGCGCGATGCTATGGATAGTGGAGATGCCGCTCTCATTGCCTCGTAGATTGACGATCCCAGTGATCAGCGAGGAGAAATGGTCGAAGCCGATG GCGGTGGCATCAGTGGTGTTCTCTCCGATCTTGCTTTCGACTCTGTTGATCGCTCAGTACGAGAGTCCGACCGGTCGTGTACTTGTGGTTGTGTACTCGA TCGGTTGTACGATCGGGATCGTGCTGGGAGCGGTTGCATACCGGACAACGAACACATCGGATCCTCCGGAAGGGAAAAGGTTCCGGCTTCCGTGGCTGGC TGGAGGGTTCTTGATGAGCGTGACGTGGAGCTACATCACAGCGCAGGAATTGGTGGCGTTGTTGGTCTCAATGGGGTACATTTTCGGGATAAGCCCTTCG ATTCTGGGGCTAACCGTACTCGCATGGGGCAACTCGATCTCGGATTTGATAACCAATTTGACAATGGCTATCAATGGTGGTCCTGAAGGTGTACAAGTGG CCATATCAGGGTGTTACGCCGGCCCAATCTTCAACATCCTGTTTGGACTCGGGTTGTCCCTGGTCGGTTCTTGTTGGGAATCGTACCCTGAACCCATTTC GATATCGTTGGACCCGTATCTTCTCGAGACGTTAGGGTTTCTGCTGGCCGGTTTGATGTGGGCATTGGTGGTGTTGCCCAGGAGAGGAATGAAGCTTGAT GGTGTCCTTGGTGGTGGCCTTTTGGTAATTTACTTGATGTCTGTTACTCTTAGGCTTGTTCAAACCTCTGGCTCACTTCAGTTCTATGCCTATAACTTGT AA
AA sequence Show only first row Show all	>Lus10020318 pacid=23144118 polypeptide=Lus10020318 locus=Lus10020318.g ID=Lus10020318.BGIv1.0 annot-version=v1.0 MGTNHSSKLKPCIIIFLNASFLLLTSSFFFFNLTQPHSNPSNLIQSQTPITCEEFQTLPSSNLKCTTLKSATNPCVSQGYIPYLTLFYCNFTNSPFLGHT FLLLWLLILFYLLGNTASEYFCSSLEDLSRILKLSPTIAGVTLLSLGNGAPDVFASIVSIGRGTTRDVGFNTMVGGASFVACVVVGSICFAVKGSRKKNV VSAVRVSQSAFLRDVFFLLLVLGSLVVTLLLKEIFLWGAVGFSLMYVVYVIVVYISSRRPRSCIVCGCCGSGTPASSWESGLSIPLLMNKEDGGGLKSIC CNSTSTSTNTSVCTSTSTSPGSSCETGLSIPILMNKENVEEGGGGGGGRRGEEEEMRRWWYNVRESRQCSAMLWIVEMPLSLPRRLTIPVISEEKWSKPM AVASVVFSPILLSTLLIAQYESPTGRVLVVVYSIGCTIGIVLGAVAYRTTNTSDPPEGKRFRLPWLAGGFLMSVTWSYITAQELVALLVSMGYIFGISPS ILGLTVLAWGNSISDLITNLTMAINGGPEGVQVAISGCYAGPIFNILFGLGLSLVGSCWESYPEPISISLDPYLLETLGFLLAGLMWALVVLPRRGMKLD GVLGGGLLVIYLMSVTLRLVQTSGSLQFYAYNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	0	1
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	1.4	0.9265
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	3.0	0.9215
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	3.2	0.9227
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10017571 [exp]	4.5	0.9184
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Lus10023228 [exp]	4.6	0.8859
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	5.5	0.9174
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022748 [exp]	5.7	0.8802
AT4G32020			unknown protein		Lus10005344 [exp]	5.7	0.9199
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10041612 [exp]	6.0	0.8932
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007804 [exp]	6.7	0.8954

Compare expression of checked genes

Lus10020318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.