Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17900 435 / 6e-151 microfibrillar-associated protein-related (.1) AT4G08580 420 / 6e-145 microfibrillar-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005672 [exp] 600 / 0 AT5G17900 505 / 2e-178 microfibrillar-associated protein-related (.1) Lus10020321 [exp] 387 / 6e-134 AT4G08580 390 / 2e-135 microfibrillar-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065600 [exp] 497 / 3e-175 AT5G17900 392 / 9e-134 microfibrillar-associated protein-related (.1) Potri.019G039900 [exp] 468 / 7e-164 AT5G17900 356 / 6e-120 microfibrillar-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06991 [flax] [poplar] MFAP1 Microfibril-associated/Pre-mRNA processing
Representative CDS sequence Show only first row Show all	>Lus10020319 pacid=23144208 polypeptide=Lus10020319 locus=Lus10020319.g ID=Lus10020319.BGIv1.0 annot-version=v1.0 ATGTCGGTGACGGCGGGTGTCAGCGACGCCGCGCTGGCGATTAGAGAGAAGCTGAAAGGCAAAATCAGCCAGACGAAGGTGAAGAGGTATTGGCCGGGGA AAGCTCCTGAGTGGGCCGACGAGGGAGACGAAGATGGCGATATCAGGATGTCCAGGCTGGAAAATCTGGAGAGAGCTTTCCCTACTCACGAAGGTGGTTC TACTGATCTCTCCGCGAGGGATGATCCCAGGCTGCGTCGTTTGGCAGGGAGCAGGGTCGATAACCGAGATGAAGCTAGGGCTGATCACCGTCGGATTCGG CAGGCGGAGATTGTTTCGACGGAGGAAGAGGAGAGGCTCCAGGAAGGTTTGGATGCCGAGGAGGAAGATGAGGAAGAGAGGAGGAGGAGAATCAAGGAGA AGATGAGGCGGCAGAGGGAGCAAGAGGAAGCTACCTTGCTCCCTGTGGAAGAAGAAGAGGAGGAGGAAGAAGAAGACGAAGAAGAGTCTGAGTATGAGAC CGATTCAGAAGAGGAGACGACCGGGATGGCAATGTTAAAGCCAGTTTTCGTTCCGAAATCAGAGAGAGATACGATAGCTGAGCGTGAGAGGCTCGAGGAG GAGGAAAGGGTGTTAGAAGAGAAGGTGAAGAAGAAGGTTGAACAGAGGAAAGTGGAGACAAAGCAGATATTGCTTGAAGAAATTAAGAAGGAGGAGCTTA TCCAGAAGAATCTGGAGATGGAGGCCAACGTTGAAGATATCGATACTGATGATGAGCTGAATGAAGCAGAGGAGTACGAGGCTTGGAAAGTGAGGGAGAT CGGGAGGATAAAGCGAGATAGGGATGCTCGGGAGGCGATGGTGAAGGAGAAGGAAGAGATCGAGAGGGTGAGGAATATGACAGAGGAAGAGAGAAGGGAA TGGGAGAGGAAGAATCCGAAACCCGCTCCTGCACAGAAGCAGAAGTGGAGGTTTATGCAGAAGTACTTCCATAAAGGAGCATTCTTTCAGGACGAGCCTG ATGATCAAGCTGCGAGTGCTGGGTCGGATAACATTTACACGAGAGATTTCTCTGCCCCGACTGGGGATGATAAGATGGACAAGACTATATTGCCTAAAGT TATGCAGGTGAAGCACTTTGGCCGCAGTGGGAGGACGAAATGGACTCATCTTGTCAATGAGGATACGACTGATTGGGAGAATCCATGGACATACAACGAT CCCCTTCGAGCAAAGTACAACGCGAAGATGGCTGGAATGAACGCTCCGATTGAGAAACCTAAAGGAAGCAAGAAACTGAAAGATTGGGAGACGAAATAA
AA sequence Show only first row Show all	>Lus10020319 pacid=23144208 polypeptide=Lus10020319 locus=Lus10020319.g ID=Lus10020319.BGIv1.0 annot-version=v1.0 MSVTAGVSDAALAIREKLKGKISQTKVKRYWPGKAPEWADEGDEDGDIRMSRLENLERAFPTHEGGSTDLSARDDPRLRRLAGSRVDNRDEARADHRRIR QAEIVSTEEEERLQEGLDAEEEDEEERRRRIKEKMRRQREQEEATLLPVEEEEEEEEEDEEESEYETDSEEETTGMAMLKPVFVPKSERDTIAERERLEE EERVLEEKVKKKVEQRKVETKQILLEEIKKEELIQKNLEMEANVEDIDTDDELNEAEEYEAWKVREIGRIKRDRDAREAMVKEKEEIERVRNMTEEERRE WERKNPKPAPAQKQKWRFMQKYFHKGAFFQDEPDDQAASAGSDNIYTRDFSAPTGDDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWENPWTYND PLRAKYNAKMAGMNAPIEKPKGSKKLKDWETK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	0	1
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10004563 [exp]	1.0	0.9303
AT4G08580			microfibrillar-associated prot...		Lus10020321 [exp]	4.0	0.8715
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	4.2	0.9078
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10014455 [exp]	6.3	0.8966
AT5G18610			Protein kinase superfamily pro...		Lus10033966 [exp]	7.3	0.8961
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10023712 [exp]	7.9	0.8874
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10021909 [exp]	8.9	0.9009
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	9.3	0.9057
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10003133 [exp]	11.5	0.8683
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10038139 [exp]	14.3	0.8539

Compare expression of checked genes

Lus10020319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.