Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17900 325 / 7e-110 microfibrillar-associated protein-related (.1) AT4G08580 325 / 1e-109 microfibrillar-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020319 [exp] 402 / 7e-140 AT4G08580 511 / 1e-180 microfibrillar-associated protein-related (.1) Lus10005672 [exp] 395 / 2e-137 AT5G17900 505 / 2e-178 microfibrillar-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065600 [exp] 349 / 4e-119 AT5G17900 392 / 9e-134 microfibrillar-associated protein-related (.1) Potri.019G039900 [exp] 347 / 3e-118 AT5G17900 356 / 6e-120 microfibrillar-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06991 [flax] [poplar] MFAP1 Microfibril-associated/Pre-mRNA processing
Representative CDS sequence Show only first row Show all	>Lus10020321 pacid=23144094 polypeptide=Lus10020321 locus=Lus10020321.g ID=Lus10020321.BGIv1.0 annot-version=v1.0 ATGAGGCGGCAGAGGGAGCAAGAGGAAGCTACCTTGCTCCCTGTGGAAGAAGAAGAGGAGGAGGAAGAAGAAGACGAAGAAGAGTCTGAGTATGAGACCG ATTCAGAAGAGGAGACGACCGGGATGGCAATGTTAAAGCCAGTTTTCGTTCCGAAATCAGAGAGAGATACGATAGCTGAGCGTGAGAGGCTCGAGGAGGA GGAAAGGGTGTTAGAAGAGAAGGTGAAGAAGAAGGTTGAACAGAGGAAAGTGGAGACAAAGCAGATATTGCTTGAAGAAATTAAGAAGGAGGAGCTTATC CAGAAGAATCTGGAGATGGAGGCCAACGTTGAAGATATCGATACTGATGATGAGCTGAATGAAGCAGAGGAGTACGAGGCTTGGAAAGTGAGGGAGATCG GGAGGATCAAGCGAGATAGGGATGCTCGGGAGGCGATGGTGAAGGAGAAGGAAGAGATCGAGAGGGTGAGGAATATGACAGAGGAAGAGAGAAGGGAATG GGAGAGGAAGAATCCGAAACCCGCTCCTGCACAGAAGCAGAAGTGGAGGTTTATGCAGAAGTACTTCCATAAAGGAGCATTCTTTCAGGACGAGCCTGAT GATCAAGCTGCGAGTGCTGGGTCGGATAACATTTACACGAGAGATTTCTCTGCCCCGACTGGGGATGATAAGATGGACAAGACTATATTGCCTAAAGTTA TGCAGGTGAAGCACTTTGGCCGCAGTGGGAGGACGAAATGGACTCATCTTGTCAATGAGGATACGACTGATTGGGAGAATCCATGGACATACAACGATCC CCTTCGAGCAAAGTACAACGCGAAGATGGCTGGAATGAACGCTCCGATTGAGAAACCTAAAGGAAGCAAGAAACTGGTAGCTTGTAAGACTAAATAA
AA sequence Show only first row Show all	>Lus10020321 pacid=23144094 polypeptide=Lus10020321 locus=Lus10020321.g ID=Lus10020321.BGIv1.0 annot-version=v1.0 MRRQREQEEATLLPVEEEEEEEEEDEEESEYETDSEEETTGMAMLKPVFVPKSERDTIAERERLEEEERVLEEKVKKKVEQRKVETKQILLEEIKKEELI QKNLEMEANVEDIDTDDELNEAEEYEAWKVREIGRIKRDRDAREAMVKEKEEIERVRNMTEEERREWERKNPKPAPAQKQKWRFMQKYFHKGAFFQDEPD DQAASAGSDNIYTRDFSAPTGDDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWENPWTYNDPLRAKYNAKMAGMNAPIEKPKGSKKLVACKTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08580			microfibrillar-associated prot...		Lus10020321 [exp]	0	1
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10026854 [exp]	1.4	0.8601
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	4.0	0.8715
AT4G20150			unknown protein		Lus10038391 [exp]	4.2	0.8478
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	4.9	0.8365
					Lus10037794 [exp]	10.8	0.7365
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	11.3	0.8400
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	13.3	0.8011
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10014815 [exp]	13.4	0.8162
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004607 [exp]	14.7	0.8342
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	19.1	0.8304

Compare expression of checked genes

Lus10020321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.