Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15020 56 / 7e-08 SNL2 SIN3-like 2 (.1.2) AT3G01320 54 / 4e-07 SNL1 SIN3-like 1 (.1.2) AT3G24260 49 / 9e-06 unknown protein AT1G24190 45 / 0.0001 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT1G59890 44 / 0.0002 SNL5 SIN3-like 5 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005670 [exp] 279 / 1e-90 AT1G24190 39 / 0.003 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10022887 [exp] 204 / 2e-59 AT1G24190 52 / 5e-07 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10032181 [exp] 50 / 5e-06 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10014504 [exp] 50 / 5e-06 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10010729 [exp] 45 / 0.0002 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10013293 [exp] 43 / 0.0007 AT1G70060 1454 / 0.0 SIN3-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350200 [exp] 50 / 6e-06 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.010G038700 [exp] 48 / 2e-05 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.008G192200 [exp] 48 / 2e-05 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [flax] [poplar] PAH Paired amphipathic helix repeat PF08295 [flax] [poplar] Sin3_corepress Sin3 family co-repressor
Representative CDS sequence Show only first row Show all	>Lus10020323 pacid=23144152 polypeptide=Lus10020323 locus=Lus10020323.g ID=Lus10020323.BGIv1.0 annot-version=v1.0 ATGGATCTCAACGCAATGCCATGGGCGTCGTGGGACTCGATGATGGCGGCGGAGTTCCCCGCCGACAAAGCATGCGCCGCAAGATCCCTCATCTCCGAAA TCAGAACCCGACTCGACCAGGAGAAGTTCCAACACTTCAAGGACACCCTACCGCGCCTCGCCTTCAGTCCGACCGAGTCACCTTTCACAGCCGAGATCGT CGACGAAATCCTCGACGGCCAGACCGACTTGATCGCCAAGTTTCACGCCTTCTTTCCGGGGAAGAAGAAGAAGAAGAAAAACCGGACCAAGTTGCCTGCG CCGCCGGCGTCGGAGATTGGGTTCCCTCAAGTATGTCCAGCGGCCGTCGAATTCGTGAAGAAGTTACGGAGGCGGGACAAGCAGCTGCAGAGATCTGTAT TGGAAGTCTTGGATTCTTGCAACAGGGGGGAGATTGGTAAGGACGATTTCGAGAGGGAGATTACGGAGCTGCTGAAAGGAGATCCCCAATTGCTTCGAGA GTTCGCGGCTTTCTTCCCGGTGACGGAAGCAACTCCCATCTCTGTAAACCCCTGTTTGATGGAAGAAGGAGAGATTAGGCATTTGGAAGGTGACGAACAG AGAAATCCGACCAGGGCAAAGTCGAGTGAACATAACCCTAACTCCCAATTGTTTCAAGAATTCGCGACTTTTTCTCCGGCGACGGAAGAAACTCCGACCC CCCTAAGCCCCTTGGAAGAAGGAGAAATTAGGGATTTGGAAGATGAAGAAGAACAGAGAAATCCAAATTCGGCAACGGATAATCTGGAGCAGGTAACGGA AGCAACTCCGATCTCCGTGAATCCCTATTTGACGGAAGAAGGAGGAACTAGGGATTTGGAAGCTGAAGAACAGGCAAAATCGAGTGAGAGTAACCCTAAC AATGAAATTCTGCGAAACAAAATCTTCAATTCGGCAGTGGATAATCTGGAGCTCTCGTTGCCGATTTTGTATCGCTACTCGAAGGGAATCAGTTATAATC CGGCGAATCTCTCAGTGGAGCTCAAGACACTGTTCCGGCTGAAACCCATCGAGAATGACCGGAAGAGAAAACGACGAACGGAAAACGAAATCATCAAAAC GAGAAAGACGACGGAGTTATTACCTCGATCGAAGAAACCAATCGACGATCGTCCGGAATATCGATCGAAGAACAGGATTACTCCGAGCTACAAGCTTCTC CTCCCGGAGAAGAAGAATTCACCATCGGCGTCGAAGGATCCGGCACTGTCAGTTCTGAACACGACCTACGTCTCCGCGCCGCGAGAGTACAGCTCGGGAG GGGGGAGAAGGATGATGCACGATCGGGCGGTGGAGGTGATGAACGAGATAGAGGAAGACCGGTACAATCTGGACATGGTGGGGGTGTACCTGAACTCGGC GGCGGATTACTTGGACGGGAAGAAGGAGAAGACGGAGGATCGGCTAGGGAAGATCTATCTGAGGAAGTGTGTGGAAACGATGTATGATTCGACGGAGGAA GTAGTGGAAATGGCGATGGAGGATCCGGAGTTCTTGGATCGGATCGTGAAGAAGCGGGTGCATCAGAAGAGTAAGGAGCTTCAAATGGAGAAGAAACGAC TTGAAAAGGTTTGGAGGGACGCCATTGCTGCTGAGCACTGTAAATCTGTAATAGTAGGGGTTTAG
AA sequence Show only first row Show all	>Lus10020323 pacid=23144152 polypeptide=Lus10020323 locus=Lus10020323.g ID=Lus10020323.BGIv1.0 annot-version=v1.0 MDLNAMPWASWDSMMAAEFPADKACAARSLISEIRTRLDQEKFQHFKDTLPRLAFSPTESPFTAEIVDEILDGQTDLIAKFHAFFPGKKKKKKNRTKLPA PPASEIGFPQVCPAAVEFVKKLRRRDKQLQRSVLEVLDSCNRGEIGKDDFEREITELLKGDPQLLREFAAFFPVTEATPISVNPCLMEEGEIRHLEGDEQ RNPTRAKSSEHNPNSQLFQEFATFSPATEETPTPLSPLEEGEIRDLEDEEEQRNPNSATDNLEQVTEATPISVNPYLTEEGGTRDLEAEEQAKSSESNPN NEILRNKIFNSAVDNLELSLPILYRYSKGISYNPANLSVELKTLFRLKPIENDRKRKRRTENEIIKTRKTTELLPRSKKPIDDRPEYRSKNRITPSYKLL LPEKKNSPSASKDPALSVLNTTYVSAPREYSSGGGRRMMHDRAVEVMNEIEEDRYNLDMVGVYLNSAADYLDGKKEKTEDRLGKIYLRKCVETMYDSTEE VVEMAMEDPEFLDRIVKKRVHQKSKELQMEKKRLEKVWRDAIAAEHCKSVIVGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10020323 [exp]	0	1
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10014125 [exp]	17.9	0.6522
AT5G27220			Frigida-like protein (.1)		Lus10027763 [exp]	32.8	0.6312
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040716 [exp]	41.5	0.6622
					Lus10033498 [exp]	46.0	0.6425
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	47.7	0.6665
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	53.1	0.6579
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10011823 [exp]	93.3	0.6104
AT2G35658			unknown protein		Lus10000594 [exp]	136.2	0.5733
					Lus10027007 [exp]	164.7	0.6104
AT1G12064			unknown protein		Lus10039031 [exp]	180.3	0.6168

Compare expression of checked genes

Lus10020323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.