Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17690 118 / 3e-29 AtLHP1, LHP1, TFL2 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005669 [exp] 534 / 0 AT5G17690 237 / 5e-74 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Lus10001338 [exp] 248 / 9e-78 AT5G17690 240 / 3e-74 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Lus10013641 [exp] 241 / 7e-76 AT5G17690 253 / 6e-80 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070400 [exp] 209 / 2e-63 AT5G17690 259 / 4e-82 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Potri.019G044400 [exp] 196 / 2e-57 AT5G17690 268 / 2e-84 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence Show only first row Show all	>Lus10020324 pacid=23144153 polypeptide=Lus10020324 locus=Lus10020324.g ID=Lus10020324.BGIv1.0 annot-version=v1.0 ATGAAGGGGAAGAGGAAAGCATCTGCAAACGCCAAGCTGCTGCCCTCTAATGGCGTCGACGACGAGCGAGATCCATCCGGCAGTGCGATCGACACTCCAC CGAATAATCGCCAGGAAGAAGATGGAAAAGAAGAAGGAAATCGGGAGAAGGTCGAGCAAGTAGAAGATATAAAAGATGAAGAAGAAGAAGGCGACGGCGA CGGAGGAGGAAAAGAAGAAGAAGAAGAAGATGGCGGTGGAGAGGCAGAGGAGGAGCGGCCCAAGCTTGACGAAGGTTTCTACGAAATGGAAGCCATCCGG CAGAAACGAGTCCGCAAGGGTCAGATTCAGTATCTCATTAAATGGCGGGGATGGCCAGAAACTGCGAATACCTGGGAGCCTAGACAGAATTTGATGTCCT GTTCTGATGTTATTGAAGCATTTGAGGAGAGGTCGGGATCGGGGAAGGGTTCCCGGAAACGCAAACGCAAGCACGGGGGATCTCATTCACAGGGCAAGAA GACGAAGCAGCAACGCGGTGGTTCTTCGGAGAATAATGCTACAGGTGATGAAGTAAGTGGCTTACCTTCCACTTCTTTGAATACCTCGAGTCTCGCCAGT CCTGCTCATATTCAGGAAAACGGTGATGCTAATGGGAACGAATCGTTGGTCCAAGTCGGTGATAATAATGGGTGCACCAGTCGACCAGAAGGTGAACACG ATCCGAAGCTTAGTGAGCTGCGGGGATCGGCAACTTCGAATGATCCGAATACAGATAAGATTGCTGTCCAGTTTCCTGATGCTGCCGGTCCCGCGGTTGA TTCGGTGGACCTTACTGCTCAGAACAGCCGTCGGACTGGTTCCAGGAGAAGGAAGTCGAGTTCCGTGAAGAGATTTAGGGAAGATCCAGCGGCTTGTGAT CCTGCTCCGTTAGATAACCCGTTATCGAACCTTTCTTTCAGCTGTAGTTCTTCTGGTTACAAAGCTGAAGATTCTCAAGATTCTCCGATCATCAAGATTC TCCAGCCACTCAGCTTCTCGGCTTCTTCGTTTGACAGCATTCAGGATGTGCTGGTAACTTTTCTTGCAATGAGGTCCGATGGCAAGGAAGTAACTGTGGA TAACAAGTTTTTGAAGACTAATAATCCATTGCTGGTAATGCAGCTAATGGAAAATGTTGGTTTATCATTTGAGATTGGCTTCATGTGTTCTTGCTTGCAT CTAACGTCTTTTCCTTGCAGTTGA
AA sequence Show only first row Show all	>Lus10020324 pacid=23144153 polypeptide=Lus10020324 locus=Lus10020324.g ID=Lus10020324.BGIv1.0 annot-version=v1.0 MKGKRKASANAKLLPSNGVDDERDPSGSAIDTPPNNRQEEDGKEEGNREKVEQVEDIKDEEEEGDGDGGGKEEEEEDGGGEAEEERPKLDEGFYEMEAIR QKRVRKGQIQYLIKWRGWPETANTWEPRQNLMSCSDVIEAFEERSGSGKGSRKRKRKHGGSHSQGKKTKQQRGGSSENNATGDEVSGLPSTSLNTSSLAS PAHIQENGDANGNESLVQVGDNNGCTSRPEGEHDPKLSELRGSATSNDPNTDKIAVQFPDAAGPAVDSVDLTAQNSRRTGSRRRKSSSVKRFREDPAACD PAPLDNPLSNLSFSCSSSGYKAEDSQDSPIIKILQPLSFSASSFDSIQDVLVTFLAMRSDGKEVTVDNKFLKTNNPLLVMQLMENVGLSFEIGFMCSCLH LTSFPCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10020324 [exp]	0	1
AT1G80930			MIF4G domain-containing protei...		Lus10003392 [exp]	4.5	0.8755
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002845 [exp]	4.9	0.8819
AT3G48120			unknown protein		Lus10004240 [exp]	10.4	0.8148
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	15.1	0.8786
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10032857 [exp]	18.5	0.8739
AT2G27430			ARM repeat superfamily protein...		Lus10013918 [exp]	23.9	0.8613
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10028188 [exp]	24.4	0.8780
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10034776 [exp]	24.7	0.8566
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	26.6	0.8768
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	26.9	0.8487

Compare expression of checked genes

Lus10020324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.