Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08540 487 / 6e-167 ATSIG1, SIG1, SIGA, SIG2, SIGB, ABC1, ATSIG2 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) AT2G36990 238 / 4e-71 SIG6, SIGF, ATSIG6, SOLDAT8 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) AT3G53920 198 / 7e-56 SIG3, SIGC SIGMA FACTOR 3, RNApolymerase sigma-subunit C (.1) AT5G13730 161 / 8e-44 SIGD, SIG4 sigma factor 4 (.1) AT1G64860 159 / 2e-42 SIGB, SIG2, SIG1, RPOD1, SIGA RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) AT5G24120 126 / 8e-31 ATSIG5, SIG5, SIGE SIGMA FACTOR 5, sigma factor E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005668 [exp] 578 / 0 AT1G08540 425 / 2e-143 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10001339 [exp] 454 / 2e-154 AT1G08540 520 / 1e-180 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10013642 [exp] 443 / 5e-150 AT1G08540 498 / 4e-172 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10009541 [exp] 152 / 5e-39 AT1G64860 438 / 2e-147 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Lus10038823 [exp] 127 / 1e-30 AT5G24120 547 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Lus10020365 [exp] 112 / 2e-26 AT1G64860 346 / 7e-115 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Lus10014934 [exp] 63 / 9e-11 AT5G24120 250 / 1e-80 SIGMA FACTOR 5, sigma factor E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070500 [exp] 495 / 3e-170 AT1G08540 558 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Potri.019G044200 [exp] 476 / 2e-162 AT1G08540 588 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Potri.006G125700 [exp] 236 / 3e-70 AT2G36990 615 / 0.0 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) Potri.006G234400 [exp] 198 / 4e-56 AT3G53920 417 / 5e-140 SIGMA FACTOR 3, RNApolymerase sigma-subunit C (.1) Potri.009G057200 [exp] 181 / 5e-51 AT5G13730 303 / 2e-99 sigma factor 4 (.1) Potri.019G043300 [exp] 166 / 7e-45 AT1G64860 679 / 0.0 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Potri.013G075400 [exp] 159 / 2e-42 AT1G64860 680 / 0.0 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Potri.015G022100 [exp] 127 / 6e-31 AT5G24120 605 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Potri.012G031100 [exp] 122 / 2e-29 AT5G24120 584 / 0.0 SIGMA FACTOR 5, sigma factor E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04545 [flax] [poplar] Sigma70_r4 Sigma-70, region 4 CL0123 [flax] [poplar] HTH PF04542 [flax] [poplar] Sigma70_r2 Sigma-70 region 2 CL0123 [flax] [poplar] HTH PF04539 [flax] [poplar] Sigma70_r3 Sigma-70 region 3
Representative CDS sequence Show only first row Show all	>Lus10020325 pacid=23144061 polypeptide=Lus10020325 locus=Lus10020325.g ID=Lus10020325.BGIv1.0 annot-version=v1.0 ATGTCTTGTGTATTGCCGCAATTCAAGTGGCCACTCCTCCACCGCCACCGCCACCATCATCATCATCATCATGCAAAGGAGTCGAATTTTCGAGCACAAT GCGCTTTGTCAACCACTGCTGAATCGCCGTCTGCTGTTGTGCTTGACTTGGAGAAGCTGAGACTTTCTACTTCTTTAGAAGCTAATTCCATGCTGTCTTC TTCTTTAGAAGCTAATTCCATGCTGTCTACTTCTCTCGAAACTAATTCGGATCCGGTCGTAGCTAATGAGATATGGACGTACACAGGAGCAATTGGTCTG CCTATTGAGGAAGCTTTCCAATCAACTTTCGCTACAGAACCACTAATCACCAGCGATGAAGCTGTGATTAGGGCAGCAGCTGCCGAGGCAATAGCTCTAG CAAGAGCTGCTGTCAGGGTTGCCAAGGAAGCGGTAGCTTTAGCTAAAGCAGACGGCAACAGCACTACTACTACTTATAACTCATCATCCACCACCACCAC CAACTCTTTCTCGGTCACGCGGTCCCAACTCACCGAAGCAGATCGAGCTCACATATTAGGAGATGATGTCGGAGAGAAAGGACAACAAGAATCCGATGAG TCTTTGGAGCCGACAGCTGAAGAACTCTCCCTTTTAGAAGAACAGTATGAAGATACAGCTGTGAGATCGACGAGGCAAATGGAGAGGAAAGTCCGGCGAG ATAAAGCAGCTGAAAAGGTTTCATCTACTACGACCATGGCCTCCGCGAGATATAATTCTATGCGTAGAAAGAAGCGTGCCTCGGTGAAACAGGTTGACCA TACTGACCGCCTGCGGTTCCTGAGAACTGCTGCGAGCGGTTCGAAGCTCCTCACTTTTGCCGAAGAATGTGAATGCTCGGAAGGAATACAGGACCTTCTG AAACTCGAGCGGCTTCAAGAGGAGCTTAAGGAGAGATATGGAGGCGAGCCGACATATGAACAATGGGCTACAGCAGCCGGCATCGATCAGCAGACGTTGC GTAAGCGCTTAAACCATGGTACCTTTTGCAAGGATAAGATGGTAAAATCAAACATAAGGCTCGTCATTTCCATTGCCAAAAACTATCAGAATGCCGGGCT GAACCTCGAAGATCTTGTCCAGGAAGGGTGCATTGGACTGGTAAGAAGTGCGGAGAAGTTTGATGCGTCGAAGGGCTTCAAATTCTCAACGTACGCTCAT TGGTGGATTAAGCAAGCACTTCGGAAGGCCCTCTCTGAACGGTCAAGAACAATACGCATACCGTTACACATTGTGAACGATGGCTACAAAGTGAAGAAAG CAAAGAGGCAACTCGAAAACGAACACGGAACGGAACCTACGCATGAAGAAATCGCCGAAGCAGCTGGGATCTCAATGAAAAGGCTCGAAGCCGTTCTGGC CACACCGAAACAACCAACGTCGCTCGACCAGAAGATCGGTGACATGGACCTGAAACCTTCGGAAATACTCTCAGACCCGAATGCAGAGTCGTTGGACGAG ATACTGATGAAGAATCTGCTGAAGCAGGACCTGCAGAAAGTGCTGGACAGCTTGAGCCCCCGAGAAAGGGAAGTGATTCGGTGGAGATTCGGGCTCGACG ATGGAAGAGTGAAGACGTTGCAAGAGATAGGAGAGCTTGTCGGAGTTTCGAGGGAGAGGATAAGGCAGATAGAGACGAGTGCTTATCAGAAGCTGAAGAG GAAGAAATGGACCAAACAGTTGCAGCAGTATGCTAATCCACTTATTAGCTGA
AA sequence Show only first row Show all	>Lus10020325 pacid=23144061 polypeptide=Lus10020325 locus=Lus10020325.g ID=Lus10020325.BGIv1.0 annot-version=v1.0 MSCVLPQFKWPLLHRHRHHHHHHHAKESNFRAQCALSTTAESPSAVVLDLEKLRLSTSLEANSMLSSSLEANSMLSTSLETNSDPVVANEIWTYTGAIGL PIEEAFQSTFATEPLITSDEAVIRAAAAEAIALARAAVRVAKEAVALAKADGNSTTTTYNSSSTTTTNSFSVTRSQLTEADRAHILGDDVGEKGQQESDE SLEPTAEELSLLEEQYEDTAVRSTRQMERKVRRDKAAEKVSSTTTMASARYNSMRRKKRASVKQVDHTDRLRFLRTAASGSKLLTFAEECECSEGIQDLL KLERLQEELKERYGGEPTYEQWATAAGIDQQTLRKRLNHGTFCKDKMVKSNIRLVISIAKNYQNAGLNLEDLVQEGCIGLVRSAEKFDASKGFKFSTYAH WWIKQALRKALSERSRTIRIPLHIVNDGYKVKKAKRQLENEHGTEPTHEEIAEAAGISMKRLEAVLATPKQPTSLDQKIGDMDLKPSEILSDPNAESLDE ILMKNLLKQDLQKVLDSLSPREREVIRWRFGLDDGRVKTLQEIGELVGVSRERIRQIETSAYQKLKRKKWTKQLQQYANPLIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	0	1
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	1.0	0.9706
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10036027 [exp]	2.0	0.9517
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10014623 [exp]	2.2	0.9475
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	3.2	0.9612
					Lus10038585 [exp]	3.5	0.9474
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	6.5	0.9464
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10035678 [exp]	7.1	0.9403
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10002361 [exp]	7.9	0.9359
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	8.0	0.9381
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	8.0	0.9462

Compare expression of checked genes

Lus10020325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.