Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17670 337 / 2e-115 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005666 [exp] 556 / 0 AT5G17670 402 / 3e-141 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070700 [exp] 360 / 7e-125 AT5G17670 404 / 2e-142 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07819 [flax] [poplar] PGAP1 PGAP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10020326 pacid=23144147 polypeptide=Lus10020326 locus=Lus10020326.g ID=Lus10020326.BGIv1.0 annot-version=v1.0 ATGCTGCAGCTTGAAACTCCATTGAAACCAAGCCAAAACGATAGATTCATATCAGAACCACCTCTGAAAATCCTCATGGCCGCCATGGGGGCTTCTTTCT CACTCAGAACTCCACCAATTCCCAACCACTGTACTTCTTCTTCATCATCTTCTTCCTCAGCCGCCATTACCAGCAATCCTCGCCCAGCAGTCATTCTTCC CGGATTGGGGAACAACACGAAGGATTACGGGTCGTTGCAGGCGAAGCTTGGGGATGAGTACGGCGTGTCGACGGTGGTGGCTAAAGTCAACAGAGTCGAT TGGCTGAGGAATGCTGTTGGTCTGTTGGATTCCAGTTACTGGAGGGGCACTCTCAAGCCTCGCCCTGTTTTTGATTGGTACCTAGAGAGGGTTGATGAGG CTGTCCAGGAGGCCTTGGAGATTGCACCAGAACATTCTGGCGATTTCGCAGGTGGAAAGCTGTCATTAATCGGACACTCGGCAGGAGGATGGCTAGCTCG AGTCTACATGGAAGAGTTCGGAGTATCCGACATCGCATTGCTGCTAACTCTCGGCACTCCTCACTTGCCACCTCCAAGGGACATTCCAGGGGTGATTGAT CAGTCCAGAGGCCTCCTAAACTACTTCGAAGACCACTATCGAAAAGCTGTCGTAACTCCCGAGCTCAAATACGTCTGTGTTGCGGGCAGATACATCAAGG GGCAAAGATTAGTTGGTAGCAACACAGAGGAGCAGGTTGGACCAGTAGTTCCGGTGGCCGATAATGTCCTTGCGGCCGATTTTGTGGATCCTGGTGCGCC CGGTCCATCTCCATTTCGTGCTCGCTTCGTTGGGCAGGGCTATAAACAGGTGTGTGGGAGAGCAGATGTTTGGGGTGATGGAGTTGTGCCTGAGGTATCA GCCCATTTGGAAGGTGCTGTGAACGTTAGCTTGGATGGTGTTTACCATTCGCCAATCGGATCCGACGATACCCTCCGGCCATGGTATGGCTCGTCCGGTG TTATCGAGCAATGGGTTCACAATCTCCTTCACTAA
AA sequence Show only first row Show all	>Lus10020326 pacid=23144147 polypeptide=Lus10020326 locus=Lus10020326.g ID=Lus10020326.BGIv1.0 annot-version=v1.0 MLQLETPLKPSQNDRFISEPPLKILMAAMGASFSLRTPPIPNHCTSSSSSSSSAAITSNPRPAVILPGLGNNTKDYGSLQAKLGDEYGVSTVVAKVNRVD WLRNAVGLLDSSYWRGTLKPRPVFDWYLERVDEAVQEALEIAPEHSGDFAGGKLSLIGHSAGGWLARVYMEEFGVSDIALLLTLGTPHLPPPRDIPGVID QSRGLLNYFEDHYRKAVVTPELKYVCVAGRYIKGQRLVGSNTEEQVGPVVPVADNVLAADFVDPGAPGPSPFRARFVGQGYKQVCGRADVWGDGVVPEVS AHLEGAVNVSLDGVYHSPIGSDDTLRPWYGSSGVIEQWVHNLLH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10020326 [exp]	0	1
AT3G25805			unknown protein		Lus10022435 [exp]	1.0	0.9728
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	2.8	0.9609
AT3G25805			unknown protein		Lus10016741 [exp]	3.7	0.9451
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	3.9	0.9598
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	4.2	0.9414
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	4.9	0.9573
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	4.9	0.9432
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	6.0	0.9367
AT5G01920		STN8	State transition 8, Protein ki...		Lus10014183 [exp]	6.0	0.9491
AT1G74470			Pyridine nucleotide-disulphide...		Lus10001642 [exp]	6.3	0.9398

Compare expression of checked genes

Lus10020326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.