Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65180 269 / 2e-84 ENTH/VHS family protein (.1.2) AT3G26990 256 / 1e-78 ENTH/VHS family protein (.1) AT5G10060 246 / 3e-75 ENTH/VHS family protein (.1) AT4G31200 47 / 5e-05 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005665 [exp] 801 / 0 AT3G26990 301 / 1e-95 ENTH/VHS family protein (.1) Lus10035182 [exp] 230 / 1e-68 AT3G26990 469 / 7e-162 ENTH/VHS family protein (.1) Lus10032013 [exp] 203 / 2e-58 AT3G26990 421 / 3e-143 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086700 [exp] 290 / 3e-91 AT5G65180 438 / 9e-151 ENTH/VHS family protein (.1.2) Potri.005G080600 [exp] 268 / 5e-83 AT5G65180 360 / 2e-120 ENTH/VHS family protein (.1.2) Potri.005G080800 [exp] 253 / 3e-77 AT5G65180 357 / 5e-119 ENTH/VHS family protein (.1.2) Potri.001G325700 [exp] 234 / 3e-70 AT3G26990 467 / 8e-161 ENTH/VHS family protein (.1) Potri.018G002000 [exp] 44 / 0.0003 AT4G31200 620 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Potri.006G279800 [exp] 43 / 0.0008 AT4G31200 579 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10020327 pacid=23144049 polypeptide=Lus10020327 locus=Lus10020327.g ID=Lus10020327.BGIv1.0 annot-version=v1.0 ATGGGCGATGATGTGTTTGATGGACAGGTACTATCTGATAAGTTATCGAAGCTCAACAATTCCCAAGCAAGCATCGAATCATTGTCACGCTGGTGTGTGA CACACCGGAAGAAAGCGAGGCAGGTTGTTGAGAGCTGGGATCAGTTATTCAAATCATCCCAGAGGGATCAGCGTGTCTCGTTCCTATACTTGGCGAATGA CATCTTACAAAACAGTAGGCGAAAGGGCAGTGAATTTGTTAATGAGTTCTGGAAAGTTCTTCCTAAAGCACTCAAACTTGTCCATGAAAGCGGAGGTGAT AGTGGAAAGAAAACAGTGGCCAGATTGGTTGACATTTGGGAAGAAAGAAAGGTATTTGGTTCTCGTGCTCAAAGTCTGAAAGATGAAATGCTCGGTAAGA TTCCTCCTCCTCCAACCGTGAGCAATGGAAAGAGCTCAACCCTGAGCGTGAACCCTATTAAGATAGTGAAAAGGGATGCCAACTCATTAAGAATTAAACT AGCTGTTGGAGGTGCTCCGGAGAAGATATTAACTGCATTTCGATCTGTTCTTGACGAAAATCAAACTGAAGAAGATGCACTCGATAAGAGTAGTGCTGCT GTATTTCATTTGGGTAAAATCAGAGAAGATATTGAAAATACATCCATCGCAGGGAATCAACCCGGTTTAGCATCAATGGATGAGCTACAAACGCAGGAAA ATGTCCTTCACCAGTGTGTTGGCCAGCTTGAAACTGCTGAAAAATCACGGACGAATCTAATTTCCCAGCTTAAAGAAGCACTTAAGGAACAAGAATCGAA GCTTGACACCATTCACAGTCAGTTACAAGTTGTGCGAGGCCACATCGAAGAATCTAGCAGTCTGAGGAAGAGGTTGGGATCTGTATCTGGATCGGGGCCA CCATCTACCACCACCACCGCAGCAGCAGCAGGTAGCGCGAAGGTTATCGAGCAGATCTCGTCTCCACCATCACAGCCAACACACACCACTCATCAGCCTG CGGTCTCCTTTGCACCTCTGAAACCCTCAGACGAAGAGAGCAACAAGGCAGCAGCCGCAGCTATGGCAGCTAAGCTCTCTGCCTCCTCGTCATCCGCTCA GATGCTATCCTCCGTGCTCTCATCCCTCGTTGCAGAAGAACTCAACGGCTCCTTGAACTCAGCTGGATTCAGCACAAGCTCGTTGGACGCTCTCCCTCCA GAGAAACGGCCTAGATTAGAGAACCCCGGTTCAGCCACCGATGCTGGCAGCTTCTTCTCCCCAGCACAACAACAGCAGCCAGGAACAACGGTTGCGCTTA TGCCGTCCATTGCCCCCTCCGGCCAGATGCAATCACCTTTCGGCGCGCCACCACCGATGCCTCTCCAGCCTCCGATCTGGCAGACTGCCGCCGCAGCAAA TCAGTACATGCAGCAGCAGCAGCCTGGTATGATGGTCAACATGATCCCGTACGGATACGGAGTAGCTAGCAGCCTCCCTCCTCCACCTCCGCCTCTACCT CCACAGTTTGCTCTCGGAATGTCAAGACCTCCTCAGCAATCACAGCCTCCAGATCCGTCTCAGCAACAACAGCAGCAGCAGACGTCAACTAATGGAGGGT ACTATCGTCCACCGGGGATAGGGTTCTACGGACAAATGCATCAGGCCACTACAGCAACTCATCCAGTACCTAGACAGTGA
AA sequence Show only first row Show all	>Lus10020327 pacid=23144049 polypeptide=Lus10020327 locus=Lus10020327.g ID=Lus10020327.BGIv1.0 annot-version=v1.0 MGDDVFDGQVLSDKLSKLNNSQASIESLSRWCVTHRKKARQVVESWDQLFKSSQRDQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPKALKLVHESGGD SGKKTVARLVDIWEERKVFGSRAQSLKDEMLGKIPPPPTVSNGKSSTLSVNPIKIVKRDANSLRIKLAVGGAPEKILTAFRSVLDENQTEEDALDKSSAA VFHLGKIREDIENTSIAGNQPGLASMDELQTQENVLHQCVGQLETAEKSRTNLISQLKEALKEQESKLDTIHSQLQVVRGHIEESSSLRKRLGSVSGSGP PSTTTTAAAAGSAKVIEQISSPPSQPTHTTHQPAVSFAPLKPSDEESNKAAAAAMAAKLSASSSSAQMLSSVLSSLVAEELNGSLNSAGFSTSSLDALPP EKRPRLENPGSATDAGSFFSPAQQQQPGTTVALMPSIAPSGQMQSPFGAPPPMPLQPPIWQTAAAANQYMQQQQPGMMVNMIPYGYGVASSLPPPPPPLP PQFALGMSRPPQQSQPPDPSQQQQQQQTSTNGGYYRPPGIGFYGQMHQATTATHPVPRQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	0	1
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	1.0	0.8995
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	1.7	0.8570
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	2.0	0.8560
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	2.2	0.8487
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	3.5	0.8408
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	3.7	0.8376
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	3.7	0.8589
AT4G39100		SHL1	short life, PHD finger family ...		Lus10028801 [exp]	5.3	0.8158
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	8.0	0.8344
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020315 [exp]	8.5	0.7844

Compare expression of checked genes

Lus10020327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.