Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03570 705 / 0 Protein of unknown function (DUF3550/UPF0682) (.1) AT4G40050 486 / 1e-165 Protein of unknown function (DUF3550/UPF0682) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005664 [exp] 1089 / 0 AT3G03570 769 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Lus10023156 [exp] 499 / 2e-170 AT4G40050 752 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Lus10012756 [exp] 376 / 9e-124 AT4G40050 620 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073200 [exp] 834 / 0 AT3G03570 794 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Potri.005G072200 [exp] 508 / 4e-174 AT4G40050 753 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1) Potri.007G096800 [exp] 494 / 1e-168 AT4G40050 750 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12070 [flax] [poplar] SCAI Protein SCAI
Representative CDS sequence Show only first row Show all	>Lus10020328 pacid=23144081 polypeptide=Lus10020328 locus=Lus10020328.g ID=Lus10020328.BGIv1.0 annot-version=v1.0 ATGTCGGAAGCAAATAGTAGTATTCCAGTTAGTGAAGTGTTCTGGTCTCTGGTGGAGAAAGCCGATAAGAAGTTCTCCAAGATCAGAGACTTGCCTTACT ACGAACGCACCAGGTATGAGTACTTCTTCAAGGTGTTCAAGGTTTACACACAGTTATGGAAGTTTCAACAAGAGAATCGGCAGAAGTTGGTGGAGTCTGG ACTGAAGAGATGGGAGATCGGTGAGATTGCATCTCGAATTGCTCAACTTTACTATGGGCAGTATATGAGGACAAGCGATGCAAGCTACTTGTCTGAATCG TACGTGTTCTACGAAGCAATATTTACTCGGGAGTATTTCAAGGATGGATTGCTTCAGGATCTCAATATTGCAAACAAGCAGTTGAGGTTCCTTGCGAGGT TTCTGATGGTGTGTTTGGTTCTTAACCGGCGGGACGTGGTTCATCAGCTCGTTAACCAGCTGAAAGTTTTGGTTGATGAATGCAGAAGGACGTATCAGGA AACTGACTTTAAAGAATGGAAGCTGGTGATTCAGGAAATAATTAGATTTTTGAAAGCTGACACAGCTTTTATGAATATCAGGCCATTGAGGTACAGCCTT GTGCTGGACCCTAATCCAGATTCTTTACCATGCGCTAAGATCAAGAGACACTTGAGACTACGAGATGTAGTTCTAAGCAGCTACCATCATAATGAGGTCA AGTTTTCTGAGCTTACTCTAGACACGTTTAGGATGCTTCAGTTCTTGGAATGGGAACCGAGTGGTACATTTTACAAGGGAAATGATTCAAAACTTGGCCA AAATGGAGTTCCAGGCCCTAGCCGGGTTAACTATGCCCAGGATATAGTTGATCCTACTTTGCCTCCAAACCCTCGGAAAGTTGTCTTATATCGTCCTTCG ATGACACATTTTTTAGCAGTTCTTGGTACCCTATGCGAGGAGCTAAATCCTGATGGAGTTCTTCTTGTCTATTTGTCAGCTTCAGGAAGAACTGGAAATA CCGTTTCGTCAATTTCAGAATCTCGAGGTTCTGTAAGCAGTGCATGGAGTTCAGGAAGGAATTTCCAATCTCAAAGCCCTGACTCAGACACTACCTCTGC TTCTAATTCCTTGAATAGTAGTGCTGATCCACCTGCAAGGAAGAGTAAAAAGGATTGTTTGAACTTCGGCACCCATTCAAATGGAGGGCAAAACAGTGTT TACCCTTCCGACTTGATTCCATTCACCAGGCGGCCTCTCGTTTTAGTCATCGACAGTGATGGCAGCGATGCATTCAAGGCAAGTGGCTGTCTCTTAAATG TCATCAATGGAGCTGAAAAAGGAGAGCCTGCCGCAATACTTCTATCCCCAATTAGTTCGATTCTGAACCCCACCACTGATGTTCCCCGCCGCGAAAGTGG TAGCCTGTTCACCATTTTCCTCACTGCTCCAGTGCAGGGCTTCTGCCTTTTACTTGGCTTATCCGGCCTTGATACCGAAATGGAGACATACAACAGGGCC GAGAAGTTGCTATCTTCGTCACTAAACGACTGGGGTGCGTCTTTGGTGATGTCAGAACCTCTGGACCCTGTTTGGGCACAGGTGTTGGGCGATCCATTCC TTAGGCGACTCGTCTTAAGATTCTTGTTCTGTCGCGCGGCATTGACACTCCACGGGACAACGTTCGGCAAGAAAGAGTTCCACCCGGACTGCTTCCCTTC CCTTCCGCCAACTTTCCTCCCCACCGCCACCGCACCCCAGACTCTAGTCTTGCAGCTGGCCAACATCTTTGGCGCCTCGAAGAAGTTCTTCTTCTCTGAT GGTATCATGCTTCCCCCCGAATTCGATCTAGACCTCGAATGA
AA sequence Show only first row Show all	>Lus10020328 pacid=23144081 polypeptide=Lus10020328 locus=Lus10020328.g ID=Lus10020328.BGIv1.0 annot-version=v1.0 MSEANSSIPVSEVFWSLVEKADKKFSKIRDLPYYERTRYEYFFKVFKVYTQLWKFQQENRQKLVESGLKRWEIGEIASRIAQLYYGQYMRTSDASYLSES YVFYEAIFTREYFKDGLLQDLNIANKQLRFLARFLMVCLVLNRRDVVHQLVNQLKVLVDECRRTYQETDFKEWKLVIQEIIRFLKADTAFMNIRPLRYSL VLDPNPDSLPCAKIKRHLRLRDVVLSSYHHNEVKFSELTLDTFRMLQFLEWEPSGTFYKGNDSKLGQNGVPGPSRVNYAQDIVDPTLPPNPRKVVLYRPS MTHFLAVLGTLCEELNPDGVLLVYLSASGRTGNTVSSISESRGSVSSAWSSGRNFQSQSPDSDTTSASNSLNSSADPPARKSKKDCLNFGTHSNGGQNSV YPSDLIPFTRRPLVLVIDSDGSDAFKASGCLLNVINGAEKGEPAAILLSPISSILNPTTDVPRRESGSLFTIFLTAPVQGFCLLLGLSGLDTEMETYNRA EKLLSSSLNDWGASLVMSEPLDPVWAQVLGDPFLRRLVLRFLFCRAALTLHGTTFGKKEFHPDCFPSLPPTFLPTATAPQTLVLQLANIFGASKKFFFSD GIMLPPEFDLDLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03570			Protein of unknown function (D...		Lus10020328 [exp]	0	1
AT5G19130			GPI transamidase component fam...		Lus10014561 [exp]	3.5	0.8684
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10030281 [exp]	5.4	0.8776
AT2G14835			RING/U-box superfamily protein...		Lus10002131 [exp]	5.5	0.8690
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10012318 [exp]	7.4	0.8650
AT5G42350			Galactose oxidase/kelch repeat...		Lus10013215 [exp]	10.2	0.8651
AT2G45590			Protein kinase superfamily pro...		Lus10036533 [exp]	10.5	0.8131
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041870 [exp]	10.5	0.8562
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	12.0	0.8579
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10033570 [exp]	13.1	0.8007
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10012104 [exp]	13.4	0.8575

Compare expression of checked genes

Lus10020328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.