Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020292 [exp] 133 / 5e-38 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10024702 [exp] 82 / 4e-19 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10032255 [exp] 82 / 5e-19 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10008295 [exp] 76 / 8e-18 AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10027258 [exp] 74 / 2e-16 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10027244 [exp] 71 / 4e-15 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10029433 [exp] 67 / 2e-13 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10014161 [exp] 67 / 2e-13 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10006513 [exp] 67 / 2e-13 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 43 / 3e-05 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10020329 pacid=23144072 polypeptide=Lus10020329 locus=Lus10020329.g ID=Lus10020329.BGIv1.0 annot-version=v1.0 ATGGTCGACAGACTGAGTGATCTCCCGGACGATATTTTGCATCACATTCTCTCCTTGCTCAACACTCGATCATCCGTACGAAGCAGCGTTCTGTCGAGGA GGTGGAGATCTCTGTGGAAGTACATTCCAGTTCTCTATTTCTGCGGAGACTGGTACAGGTTCAGGACGCAGATCGATTTCGAGCAGCACGTGGACCGAGT TCTATCTCTTCGTTCTGGATTTGGCGTCAGAAAGATTACGGCCAGCGGTAATCTCTTAGGCAACGGGATCGATCTTTTCAACAGGATGATGAAACACGCC GCCTCGCATGCTATCCAACACTTAATCTTCGTCAACCTTCTATATCACCCTGTAGCAGGCAAAGCCGCCATTACGGCAGCTGTCTCAGGTTGCTACCGGT CTCTAAACATTCTGGAGCCTGTTACATGA
AA sequence Show only first row Show all	>Lus10020329 pacid=23144072 polypeptide=Lus10020329 locus=Lus10020329.g ID=Lus10020329.BGIv1.0 annot-version=v1.0 MVDRLSDLPDDILHHILSLLNTRSSVRSSVLSRRWRSLWKYIPVLYFCGDWYRFRTQIDFEQHVDRVLSLRSGFGVRKITASGNLLGNGIDLFNRMMKHA ASHAIQHLIFVNLLYHPVAGKAAITAAVSGCYRSLNILEPVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58880			F-box/RNI-like superfamily pro...		Lus10020329 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	4.9	0.9556
					Lus10017955 [exp]	5.3	0.9572
					Lus10009699 [exp]	7.3	0.9450
AT2G24960			unknown protein		Lus10042421 [exp]	7.5	0.9541
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	7.7	0.9453
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	10.4	0.9493
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	12.6	0.9376
					Lus10039496 [exp]	12.6	0.9396
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	13.1	0.9384
					Lus10002859 [exp]	15.2	0.9430

Compare expression of checked genes

Lus10020329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.