Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 414 / 1e-141 HXXXD-type acyl-transferase family protein (.1) AT3G03480 369 / 2e-124 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 227 / 2e-69 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 211 / 3e-63 HXXXD-type acyl-transferase family protein (.1) AT3G48720 204 / 8e-61 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G03390 176 / 9e-50 HXXXD-type acyl-transferase family protein (.1) AT1G27620 169 / 3e-47 HXXXD-type acyl-transferase family protein (.1) AT3G62160 155 / 2e-42 HXXXD-type acyl-transferase family protein (.1) AT5G48930 155 / 2e-42 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G28680 144 / 5e-38 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020332 [exp] 619 / 0 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 586 / 0 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 491 / 6e-172 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 477 / 1e-166 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 398 / 3e-136 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 382 / 2e-131 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 332 / 3e-112 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10001341 [exp] 227 / 6e-73 AT5G17540 205 / 5e-65 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 234 / 8e-72 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G074500 [exp] 486 / 4e-170 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 481 / 3e-168 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 475 / 6e-166 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 465 / 5e-162 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 414 / 6e-142 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 410 / 2e-140 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 406 / 7e-139 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 401 / 1e-136 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 395 / 4e-134 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 393 / 2e-133 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10020330 pacid=23144033 polypeptide=Lus10020330 locus=Lus10020330.g ID=Lus10020330.BGIv1.0 annot-version=v1.0 ATGGGTCCAACCTCCTCTCCTCTCATCTTCAAAGTCCACCGGTCCGAACCAGAGCTGGTCCGACCGGCCAAACCGACCCCACACGAGACGAAACTCCTCT CCGACATCGACGACCAAGAAGTACTCCGGTTCCACTTCCCGATGATTCAGTTCTACAAACACAGCCCTAAGATGCACGGCAAGGACCCGGCGAGGGTTAT TCGAAGGGCGGTGGCGGAGACTCTGGTGTACTATTACCCTTTGGCCGGCCGGCTCAGAGAAGGCCCAAACCGGAAGCTCATAGTGGATTGCACCGGGGAA GGCGTGCTTTTCATCGAGGGCGACGCCGATGTACGGCTGTCGGAGTTCGGCGAGAATATCCGGCCGCCGTTTAGTTGTGTTGATGAGTTGTTGTTTGATG TTCCTGGTTCTTCCGCCGTTCTTCATTCTCCTCTCTTGCTTATTCAGGTCACGCGCCTTCATTGCGGCGGCTTTATAGTTTCCCTCCGCATCAACCACTG CATGAGCGACGCCGTTGGTCTCATTCAATTCATTTTTGCAGTCGCTGAAATCGCACGCGGAGCAACGGCTCCAACCATGACACCGGTCTGGGAACGACAC ATCCTCAGCGCACGCTCGCCTCCGCAAGTGACCTGCACGCACGACGAGTACAAACCATTACAAACAACATTAACCACCACAACCGACGACCTCCCGGTAG CAGGTTCCTTCTTTTTCGGCCCCGCTGAAATATCCGCCCTCCGGTGCCTTCACGTGCCAACACGCACACATGCCTCTCAATTCGAGATCCTTGCAGCCTG CCTATGGAAGTGTCGGACAGCCGCCCTCAAACCGGACGACCCGAACCAAGAGATGCGAATGATCTTAACCGTTAATTCCAGGGGAAAACTCGCAAATCCG CCCCTGTCGAGGGGTAACTACGGGAACGCCCAGGCGTTCCCGATGGCGGTGGCTCCCGCACGCGAGCTGTGCCAGAAACCACTCATGTATGCTCTGGGTT TGGTGAAGAAGGCGAAATTGAAGGTGAACGATGAGTACATGAAGTCGGTTGCGAATTTGATGGCACTGGAACGACATCGTCGGCCTGATATTGCAATGAC GAAGTGGACATGCATATTGTCGGATGTGAGTCATGCCGGGTTTGAGAAGGTGGATTTCGGGTGGGGTGAGGCGGTTTACGGCGGTCCACTTGGGCCGGAT CCGGCGAGACTCACCAACTTTTGCTTGTCGGCGGGTGTGAATAAGGAAGGGATCATTCTAATGGTTAGCCTGTCGCCAGTGGCGATGGAGAGGTTCACGA CAGAGTTGGAGAGCATGCTCCATGGACCTCTCGACTATGGTGACGGCGTCACAGGGACTCGAATCCAAAAAAAATTGTCAACTTTATGA
AA sequence Show only first row Show all	>Lus10020330 pacid=23144033 polypeptide=Lus10020330 locus=Lus10020330.g ID=Lus10020330.BGIv1.0 annot-version=v1.0 MGPTSSPLIFKVHRSEPELVRPAKPTPHETKLLSDIDDQEVLRFHFPMIQFYKHSPKMHGKDPARVIRRAVAETLVYYYPLAGRLREGPNRKLIVDCTGE GVLFIEGDADVRLSEFGENIRPPFSCVDELLFDVPGSSAVLHSPLLLIQVTRLHCGGFIVSLRINHCMSDAVGLIQFIFAVAEIARGATAPTMTPVWERH ILSARSPPQVTCTHDEYKPLQTTLTTTTDDLPVAGSFFFGPAEISALRCLHVPTRTHASQFEILAACLWKCRTAALKPDDPNQEMRMILTVNSRGKLANP PLSRGNYGNAQAFPMAVAPARELCQKPLMYALGLVKKAKLKVNDEYMKSVANLMALERHRRPDIAMTKWTCILSDVSHAGFEKVDFGWGEAVYGGPLGPD PARLTNFCLSAGVNKEGIILMVSLSPVAMERFTTELESMLHGPLDYGDGVTGTRIQKKLSTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	0	1
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	1.4	0.9852
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	2.0	0.9716
AT2G24960			unknown protein		Lus10042421 [exp]	3.2	0.9777
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10041536 [exp]	4.2	0.9617
AT3G58880			F-box/RNI-like superfamily pro...		Lus10020329 [exp]	4.9	0.9556
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006303 [exp]	5.1	0.9217
					Lus10039496 [exp]	5.2	0.9720
					Lus10009699 [exp]	6.6	0.9611
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	7.1	0.9228
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	7.7	0.9656

Compare expression of checked genes

Lus10020330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.