Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 460 / 1e-159 HXXXD-type acyl-transferase family protein (.1) AT3G03480 411 / 1e-140 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 233 / 3e-71 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 211 / 2e-63 HXXXD-type acyl-transferase family protein (.1) AT3G48720 206 / 1e-61 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 189 / 9e-55 HXXXD-type acyl-transferase family protein (.1) AT1G03390 170 / 2e-47 HXXXD-type acyl-transferase family protein (.1) AT1G28680 169 / 3e-47 HXXXD-type acyl-transferase family protein (.1) AT3G62160 164 / 2e-45 HXXXD-type acyl-transferase family protein (.1) AT2G19070 162 / 8e-45 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005661 [exp] 668 / 0 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 531 / 0 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 509 / 4e-179 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 509 / 1e-178 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 467 / 2e-162 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 451 / 1e-158 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 447 / 2e-157 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10001027 [exp] 300 / 4e-99 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1) Lus10001341 [exp] 242 / 8e-79 AT5G17540 205 / 5e-65 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043600 [exp] 645 / 0 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 642 / 0 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 583 / 0 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 572 / 0 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 518 / 0 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 514 / 0 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 457 / 1e-158 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 446 / 2e-154 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.011G153500 [exp] 434 / 2e-149 AT5G17540 388 / 1e-131 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 432 / 1e-148 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10020331 pacid=23144136 polypeptide=Lus10020331 locus=Lus10020331.g ID=Lus10020331.BGIv1.0 annot-version=v1.0 ATGGCCACATCACTAGTCTTCAACGTCGAGAGACGCGAACCGGAGCTGGTCCGACCAGCCAAACCGACCCCCTACGAGTTCAAACCGTTATCCGACATCG ACGACCAGGAGGGGCTCCGGTTCCACATCCCGGTGATCCAGTTCTACAAGCACCGCCCTTCCATGGCCGGAAAGGATCCTGTCGCGGTCATTCGGACCGC CCTGGCCGAGACCCTCGTGCCTTACTACCCGTTCGCGGGACGACTCAGGGAAGCTGGCCAGAACAAGAAGCTCGTGGTCGAGTGTACAGGGGAAGGTGTT CTGTTTATTGAAGCCGACGCCGACGTACGGATGGCGGACTTCGGCGAGTTTCTTCAGCCGCCGTTCCCTGGGTTTGAAGAGTTGCTGTTCGATGTCCCTG GGTCTAGCGCCGTCCTGCACTCGCCGTTGTTGCTTATTCAGGTCACACGCCTCCGATGCGGCGGCTTCATCTTCGCCCTCCGCCTCCACCATTGTATGAG CGACGCTCCGGGTCTGGTCCAGTTCATTTCCGCCATCGGTGAGATAGCCCGTGGCGCGACCTCCCCTTCGATCCCGCCAGTGTGGGAGCGCCACGTTCTC AACGCGCGGTCTCCCCCGCTGGTGACATGCACGCACCGCGAGTACGAAGAAGTGCCCGACACGAAGGGAACCCTCATCCCGCTAGATGACATGGAGCACC GTTCCTTCTTCTTCGGCCGGAAGGAGATGACGGCGCTCCGAGCCCACGCACCGCCGCACCTCCGCGGGAAATGCTCCCAGTTCGAGATCCTAACCGCCTG CCTCTGGAAGTGCCGCACCGCGGCGCTGCGACCCGACCCGGAGGAGGAGATGCGGATCATCTGCATCGTCAACGCTCGCGCCAAATTCGACCCGCCGCTT CCCAGGGGGTACTATGGCAACGCGTTCGCCTTCCCCGCCGCGGTGGCACGTGCGGACGATCTGTGCAGGAACCCGCTCGGGTACGCGCTGGATCTAGTGA GGAAGGCCAAATCGGACGTGAACGAGGAGTACATGAGGTCGGTGGCGGATATGATGGCGACAAACGGGAGGAGGCACTTCACGGTGGTGAGATCTTACCT GGTCTCCGACGTCACCCGCGCCGGGTTTGACGTGGTAGACTTCGGGTGGGGGAAGGCGGCGTACGCCGGACCGGCGAAGGGTGGCGTCGGCGCAATTCCC GGAGTGGCGAGCTTTTACATTCCTTTTACCAACAAGGAAGGGGAGAAGGGAATTGTGTTGCCGATCTGTCTGCCAGCGGAGGCGATGGAGATTTTTGTGA AGGAGCTGGAGAGGATGTTGAAGGAGGCTCCGGCGGCCGGTACCGGAGATAAGGTTAACAGATCGACGTTTATCTTATCGGCGTTGTGA
AA sequence Show only first row Show all	>Lus10020331 pacid=23144136 polypeptide=Lus10020331 locus=Lus10020331.g ID=Lus10020331.BGIv1.0 annot-version=v1.0 MATSLVFNVERREPELVRPAKPTPYEFKPLSDIDDQEGLRFHIPVIQFYKHRPSMAGKDPVAVIRTALAETLVPYYPFAGRLREAGQNKKLVVECTGEGV LFIEADADVRMADFGEFLQPPFPGFEELLFDVPGSSAVLHSPLLLIQVTRLRCGGFIFALRLHHCMSDAPGLVQFISAIGEIARGATSPSIPPVWERHVL NARSPPLVTCTHREYEEVPDTKGTLIPLDDMEHRSFFFGRKEMTALRAHAPPHLRGKCSQFEILTACLWKCRTAALRPDPEEEMRIICIVNARAKFDPPL PRGYYGNAFAFPAAVARADDLCRNPLGYALDLVRKAKSDVNEEYMRSVADMMATNGRRHFTVVRSYLVSDVTRAGFDVVDFGWGKAAYAGPAKGGVGAIP GVASFYIPFTNKEGEKGIVLPICLPAEAMEIFVKELERMLKEAPAAGTGDKVNRSTFILSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020331 [exp]	0	1
AT2G27310			F-box family protein (.1)		Lus10013309 [exp]	1.7	0.9380
					Lus10006091 [exp]	2.0	0.9552
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10018050 [exp]	2.4	0.9297
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	4.0	0.9541
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10013550 [exp]	5.7	0.9208
AT5G48655			RING/U-box superfamily protein...		Lus10022774 [exp]	7.7	0.9232
					Lus10025243 [exp]	7.9	0.9288
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	8.5	0.9234
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Lus10041534 [exp]	8.7	0.9050
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	9.2	0.9016

Compare expression of checked genes

Lus10020331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.