Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 464 / 5e-161 HXXXD-type acyl-transferase family protein (.1) AT3G03480 395 / 4e-134 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 248 / 5e-77 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) AT3G48720 233 / 2e-71 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 203 / 5e-60 HXXXD-type acyl-transferase family protein (.1) AT5G48930 191 / 2e-55 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G03390 191 / 4e-55 HXXXD-type acyl-transferase family protein (.1) AT3G62160 181 / 6e-52 HXXXD-type acyl-transferase family protein (.1) AT1G28680 176 / 1e-49 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005660 [exp] 734 / 0 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 638 / 0 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 570 / 0 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 542 / 0 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 479 / 1e-167 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 410 / 3e-142 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 348 / 2e-118 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10001027 [exp] 258 / 6e-83 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1) Lus10043189 [exp] 259 / 3e-81 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043600 [exp] 541 / 0 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 533 / 0 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 527 / 0 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 513 / 0 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 476 / 8e-166 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 461 / 4e-160 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 459 / 1e-159 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 440 / 1e-151 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.001G127400 [exp] 433 / 4e-149 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G127600 [exp] 424 / 2e-145 AT5G17540 406 / 1e-138 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10020332 pacid=23144115 polypeptide=Lus10020332 locus=Lus10020332.g ID=Lus10020332.BGIv1.0 annot-version=v1.0 ATGGGTCCAATGATCGAAACCCGATCTTCTTCCTCCCTGATTTTCACTGTCAAACGGTCCGAACCGGAGCTGGTCCGACCAGCAAAACCAACCCCACACG AGACGAAGCTCCTCTCGGACATCGACGACCAGGACGGACTCCGGTTCCACTTCCCGGTGATTCAGTTCTACAAACAGAGCCCTACCATGCACGGCAAGGA CCCTGCGATGGTTATTCGACAGGCGGTGGCGGAGACTCTCGTGTACTATTACCCTTTGGCCGGCCGGCTCAGGGAAGACCCCAACCGGAAGCTCATGGTG GATTGCACCGGGGAAGGCGTGCTTTTCATCGAGGCTGACGCCGATGTACGGCTGTCGGAGTTCGGAGAGAACATCCGGCCGCCGTTTGGTTGTGTTGAGG AGTTGTTGTTTGATGTTCCTGGTTCCTCCGCCGTGCTTCATTCTCCTCTCTTGCTTGTTCAGGTCACACGACTTCGATGTGGAGGCTTCATACTAGCCCT CCGCATCCACCACTGCATGAGCGACGCTGCTGGTCTCATTCAGTTCATGTTTGCTGTCGCTGAAATTGCCCGCGGAGCAACAGCTCCAACCGTCGCACCG GTATGGGATCGGCACATTCTGAGTGCGCGATCCCCTCCGCGAGTGACGTGTGAGCACAATGAATACAAACAATTGCCAATAATAACCACATCATCGCCGG ACAATCAAGCAGGCATGACGTCGGCTTTCTTTTTCTTCGGTCCCGCAGAAATATCCGCCCTCCAGCGCCGTCACGGGACTAGTAGTACTCCACGCGCCTC GCGATTCGAGATCCTCGCGGCCTGCCTATGGAAGTGTCGAACCGCGGCCCTCAGGCTCGACCCGGATGAAGAGGCGCGGATGGTCTGCATGGTTAATGTC AGGGGTAAACTCGTAGCTACACCGCCCTTGTTGCCTAGAGGCTATTACGGAAACGCCCTAGCGTTTCCGATGGCAGTGGCTCCCGCCGGGGAGCTGTGCC AGAAGCCGCTCGTGTATGCTCTGGATCTGGTGAGGAAGGCGAAATCAAAGGTGAACGAGGAGTACATGAAGTCAGCTGTGGACCTGATGGTCTTGGAAGG GCAACCGAAAGCGTCGATGATGAAGTGGCCGACGTATGCATTGTCGGATGTGAGTCGTGCCGGGTTTAGTGAAGTAGATTTCGGATGGGGGGAGGCGGTT TACGGCGGCCTGATCGGGGCGGATGTGACGGGTGTGACAAACTTCTGTATGTCTGGTACGAATAAAGAAGGGGAGAAGGGAGTTGTTTTGGCGGTTAGCT TGCCGGTGACAGTGATGAAGAGGTTCGTGAAAGAGTTGGAGAGCATGTTGCACGACGAACCTCTTGCATTTGGCCACGCCATTGTCGACGATCAAATCAA TAAGTTTTCTTATATTTTGTCGGCTTTATGA
AA sequence Show only first row Show all	>Lus10020332 pacid=23144115 polypeptide=Lus10020332 locus=Lus10020332.g ID=Lus10020332.BGIv1.0 annot-version=v1.0 MGPMIETRSSSSLIFTVKRSEPELVRPAKPTPHETKLLSDIDDQDGLRFHFPVIQFYKQSPTMHGKDPAMVIRQAVAETLVYYYPLAGRLREDPNRKLMV DCTGEGVLFIEADADVRLSEFGENIRPPFGCVEELLFDVPGSSAVLHSPLLLVQVTRLRCGGFILALRIHHCMSDAAGLIQFMFAVAEIARGATAPTVAP VWDRHILSARSPPRVTCEHNEYKQLPIITTSSPDNQAGMTSAFFFFGPAEISALQRRHGTSSTPRASRFEILAACLWKCRTAALRLDPDEEARMVCMVNV RGKLVATPPLLPRGYYGNALAFPMAVAPAGELCQKPLVYALDLVRKAKSKVNEEYMKSAVDLMVLEGQPKASMMKWPTYALSDVSRAGFSEVDFGWGEAV YGGLIGADVTGVTNFCMSGTNKEGEKGVVLAVSLPVTVMKRFVKELESMLHDEPLAFGHAIVDDQINKFSYILSAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020332 [exp]	0	1
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10035178 [exp]	1.0	0.9023
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10023667 [exp]	2.4	0.8074
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030410 [exp]	3.2	0.8128
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10012720 [exp]	6.9	0.7793
AT4G14368			Regulator of chromosome conden...		Lus10027273 [exp]	13.3	0.8003
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Lus10043383 [exp]	14.8	0.7123
					Lus10036026 [exp]	41.8	0.7057
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10038939 [exp]	46.2	0.7596
					Lus10043436 [exp]	75.3	0.6754
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10023980 [exp]	81.3	0.7248

Compare expression of checked genes

Lus10020332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.