Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 162 / 2e-47 HXXXD-type acyl-transferase family protein (.1) AT3G03480 154 / 2e-44 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT3G62160 84 / 1e-18 HXXXD-type acyl-transferase family protein (.1) AT3G48720 83 / 2e-18 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G28680 82 / 5e-18 HXXXD-type acyl-transferase family protein (.1) AT5G63560 79 / 4e-17 HXXXD-type acyl-transferase family protein (.1) AT5G41040 77 / 2e-16 HXXXD-type acyl-transferase family protein (.1.2) AT2G25150 75 / 2e-15 HXXXD-type acyl-transferase family protein (.1) AT3G47170 69 / 1e-13 HXXXD-type acyl-transferase family protein (.1) AT5G07080 68 / 2e-13 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005659 [exp] 303 / 2e-102 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 228 / 9e-73 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 218 / 9e-69 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 209 / 9e-66 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 206 / 8e-65 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 190 / 5e-58 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 178 / 3e-55 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 123 / 3e-34 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10001027 [exp] 122 / 1e-33 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G074500 [exp] 207 / 7e-65 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 201 / 1e-62 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 187 / 2e-57 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 186 / 1e-56 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 176 / 7e-53 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 175 / 2e-52 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 166 / 3e-49 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 162 / 2e-47 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.013G112100 [exp] 157 / 1e-45 AT5G17540 378 / 7e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 152 / 1e-43 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10020333 pacid=23144128 polypeptide=Lus10020333 locus=Lus10020333.g ID=Lus10020333.BGIv1.0 annot-version=v1.0 ATGATTCGGCCGCCGTTTGCTTGTGTTGAGGAGTTGTTTGATGTTCCTGGTTCCTCCGACGTTCTTGATTCTCCTCTCATGCTTATTCAGGTCACGCGCC TCCGATGTGGCGGTTTCATATTCGCCCTCCGCCTTCACCGCTGCATGAGCGATGCTCCGGGCCTCGTCCAATTCCTCACCGCCGTCGCTGAAATCGCCCG CGAAGCTACCACTCCCTCCATCAGCCCGGTTTGGGGACGAAAAAACTTCATGCGCCCCCACAACCAACCACCGCCACCCACCGCCCCACCGCCACAATAC CAAGACATAGCACAACGCTCCTTCTTCTTTGGACCCGCCCAAATATCGAGCCTCCACTGCCACGCACTCCCTCCTCGTCACCACCGGCCCTACTCTCGCT TCGAAATCCTCGCAGCCTGTCTATGGAAGTGTCGAACCGCCGCCCTCCGGCCCAACCCGGAGGAAGAGATGCGGATGGTCTGCACGGTCAACGTTCGGGG CAAACTCGTCACCAATCCGCCCTTTCTAGGCGGATACTACGGGAACGCCCTGGCGTTCCCAACGGTAGCAGCTCCCGCGGGAGAGCTGGAACCCGCTCGG ATACTCTCTGGATCTGACGAGGAAGGCGAAATCATCGCATGA
AA sequence Show only first row Show all	>Lus10020333 pacid=23144128 polypeptide=Lus10020333 locus=Lus10020333.g ID=Lus10020333.BGIv1.0 annot-version=v1.0 MIRPPFACVEELFDVPGSSDVLDSPLMLIQVTRLRCGGFIFALRLHRCMSDAPGLVQFLTAVAEIAREATTPSISPVWGRKNFMRPHNQPPPPTAPPPQY QDIAQRSFFFGPAQISSLHCHALPPRHHRPYSRFEILAACLWKCRTAALRPNPEEEMRMVCTVNVRGKLVTNPPFLGGYYGNALAFPTVAAPAGELEPAR ILSGSDEEGEIIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020333 [exp]	0	1
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	3.3	0.9134
AT2G13980			Polynucleotidyl transferase, r...		Lus10011601 [exp]	3.5	0.8348
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	4.7	0.9134
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	5.7	0.9134
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	6.6	0.9102
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	7.7	0.9083
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	7.7	0.9009
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006697 [exp]	7.9	0.8584
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	7.9	0.8969
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028003 [exp]	11.5	0.8369

Compare expression of checked genes

Lus10020333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.