Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42050 709 / 0 vacuolar ATP synthase subunit H family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005658 [exp] 854 / 0 AT3G42050 724 / 0.0 vacuolar ATP synthase subunit H family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G078700 [exp] 781 / 0 AT3G42050 754 / 0.0 vacuolar ATP synthase subunit H family protein (.1) Potri.019G047800 [exp] 759 / 0 AT3G42050 703 / 0.0 vacuolar ATP synthase subunit H family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03224 [flax] [poplar] V-ATPase_H_N V-ATPase subunit H CL0020 [flax] [poplar] TPR PF11698 [flax] [poplar] V-ATPase_H_C V-ATPase subunit H
Representative CDS sequence Show only first row Show all	>Lus10020335 pacid=23144169 polypeptide=Lus10020335 locus=Lus10020335.g ID=Lus10020335.BGIv1.0 annot-version=v1.0 ATGGCGGTTGAGACTGATCGATCTCGGAGTAGCAATTGTGATCTGTACGATTCCGAGTCGCATTTCTCAACTGTTGCGACGTTTGCGATGGAGCACGCTG AGCTGACTGCTGATCAGGTTCTGAGGAGGGATATTCCATGGGAGACTTACATGGTGACTAAGCTGATATCAGGGACAGACCTTCAGCTGTTGAGGCGCTA TGATAAGAAATCCAAGAGCCACAAAGCACAATTGCTAGATGATACTGGTGTAGCATATGTTCGGTTGTTTGTTAGCATTCTGCGTGATATATTCAAAGAA GAAACTGTTGAATATGTCTTGGCTATGATTGATGAAATGCTGACAGCAAATCCCAAAAGGGGCAGGTTGTTCCATGACAAGGCTCTTGCAAGTGAGGATA CTTATGAGCCCTTCTTAAGATTGCTCTGGAAAGGCAACTGGTTCATACAAGAAATGAGCTGCAAGATTCTAGCTGTGATAGTAAGTGCTAGGCCGAAAAG TCTAGGGAGCTCTCTGTCAAATGGAGAAGCCTCAAATTCCAAGAGCAAAGTGACTGCTATCGATGATGTGCTGAAAGGGCTGGTTGAATGGCTCTGTGCT CAGCTGAAGAAACCTTCACACCCCATTCGTGCCATCCCAAATGCTATTAGTTGCCTGTCAATGTTACTGAAGGAACCTGTTGTCAGATCTTCGTTTGTTG AGGCAGATGGAGTGAAACTGCTGATTCCTTTAATATCTCCAGCATCGACCCAACAATCGATCCAGCTCCTCTATGAAACCTGTCTTTGTATCTGGCTGCT ATCTTACTACGAACCTGCAATTGAATATCTGGCTACTTCTAGAACCTTACCACGACTTGTGGAGGTTGTAAGGAGTTCAACGAAGGAGAAGGTTGTCCGT GTAGTCGTCCTGACTTTCAGGAACTTGCTCTCCAAAGGAACATTTGGTGCTCAGATGGTAGGCCTTGGACTTCCGCAAGTTGTTCAAAATCTGAAAGCCC AAGCATGGAGTGATGAGGACCTACTCGACACCCTCGACAAGCTCGAGGAAGGGCTCAAGGAGAACATCAAGAAACTCAGCTCTTTCGACAAGTACAAGCA AGAGGTCCTCCTCGGCCACCTAGACTGGTCTCCCATGCACAAAGACCCCATCTTCTGGCGCGAGAACATCACCACCTTCGAAGAGAACGACTTCCAGATT CTCAGGGTGCTGCTCACGATACTGGAGACATCCAACGACGCAAGAGCCATGGCCGTGGCTTGCTACGACCTCTCCCAGTTCATCCAGTACCACCCAGCCG GTCGGGTCATCGTGACCGACCTCAAGGCGAAGGAGAGGGTGATGAAGCTGATGAACCACGAGAATGGCGAGGTGACCAAGAATGCACTCCTCTGCATCCA GAGGCTCTTCCTGGGAGCCAAGTATGCAAGCTTTTTACAGGTCTAA
AA sequence Show only first row Show all	>Lus10020335 pacid=23144169 polypeptide=Lus10020335 locus=Lus10020335.g ID=Lus10020335.BGIv1.0 annot-version=v1.0 MAVETDRSRSSNCDLYDSESHFSTVATFAMEHAELTADQVLRRDIPWETYMVTKLISGTDLQLLRRYDKKSKSHKAQLLDDTGVAYVRLFVSILRDIFKE ETVEYVLAMIDEMLTANPKRGRLFHDKALASEDTYEPFLRLLWKGNWFIQEMSCKILAVIVSARPKSLGSSLSNGEASNSKSKVTAIDDVLKGLVEWLCA QLKKPSHPIRAIPNAISCLSMLLKEPVVRSSFVEADGVKLLIPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLVEVVRSSTKEKVVR VVVLTFRNLLSKGTFGAQMVGLGLPQVVQNLKAQAWSDEDLLDTLDKLEEGLKENIKKLSSFDKYKQEVLLGHLDWSPMHKDPIFWRENITTFEENDFQI LRVLLTILETSNDARAMAVACYDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENGEVTKNALLCIQRLFLGAKYASFLQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42050			vacuolar ATP synthase subunit ...		Lus10020335 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10036657 [exp]	3.5	0.8013
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10004630 [exp]	3.5	0.7751
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10017268 [exp]	4.9	0.7890
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	6.2	0.7902
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	12.0	0.7708
AT1G16240		ATSYP51, SYP51	syntaxin of plants 51 (.1.2.3)		Lus10002446 [exp]	12.8	0.7742
AT5G52430			hydroxyproline-rich glycoprote...		Lus10039253 [exp]	13.4	0.7438
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10027269 [exp]	14.5	0.7566
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	15.0	0.7606
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	15.5	0.7525

Compare expression of checked genes

Lus10020335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.