Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12650 198 / 2e-63 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017837 [exp] 340 / 5e-119 AT1G12650 224 / 2e-73 unknown protein Lus10024493 [exp] 340 / 7e-119 AT1G12650 228 / 4e-75 unknown protein Lus10005657 [exp] 278 / 1e-94 AT1G12650 179 / 1e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110000 [exp] 275 / 2e-93 AT1G12650 215 / 5e-70 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06102 [flax] [poplar] RRP36 rRNA biogenesis protein RRP36
Representative CDS sequence Show only first row Show all	>Lus10020336 pacid=23144058 polypeptide=Lus10020336 locus=Lus10020336.g ID=Lus10020336.BGIv1.0 annot-version=v1.0 ATGGCGAAACCCAGTTACGTTAGCAAATCCCAGTTTCTGGAAAGTGAAGAAGACGACGAGGAGCTCGCGTCTTCTTCGTCAGAAGAGGATGATGAGGAGG ATGAATTAGAGAGACAACTTGCCAATGTAACGTTTGAGGAGCTACAGGAAGCAATGTCCAATGGTTCTGACTCGGTTTACAGAAAGCCCAACTTAGAGAA GAAGTCTAAGAGAGCCAACAAGAACAGGCCGGTGGAAGTCACTTGCAAAAAGCCAGTTAGTCGGTCTCGAGAGGTCATTCAAGCTCCCAAGAAGGTGGTA CGTGATCCTCGATTCGAGTCCTTGTGTGGTACACTAAATGTGGAGTGGTATAGGAAAAGATACAATTTTCTGTACGAGACTGATCTTCCTGCTGAAAATG AGGAGTTGAAGAAACAGCTTAACAAATCGAAAGACCCTGTTTCGATAGAGCGATTGAAGGAGCAAATTGCTTGGATTGACAAGCAGCTGACGTCCGACAC GTCGAAACAAGTGGAATCCTCGATTCTGACTGAGCACAAGAAGAAAGAGAGGGAAGCAGCAAAGCGCGGCAAACAACCATTTTATCTCAAGAAATCTGAT ATCAAGAAACAGAGGCTGGTGGACAAGTATAAGGAACTCGAGGCAAATGGAAAGCTTAAATCTTTCATTGAGAAGAAGAGAAAGAAGAATGCTGCCAAGG ACCACAGGTTTATGCCATACCGAAGACCGGCCTCAGACGAACAACAGAGCTGA
AA sequence Show only first row Show all	>Lus10020336 pacid=23144058 polypeptide=Lus10020336 locus=Lus10020336.g ID=Lus10020336.BGIv1.0 annot-version=v1.0 MAKPSYVSKSQFLESEEDDEELASSSSEEDDEEDELERQLANVTFEELQEAMSNGSDSVYRKPNLEKKSKRANKNRPVEVTCKKPVSRSREVIQAPKKVV RDPRFESLCGTLNVEWYRKRYNFLYETDLPAENEELKKQLNKSKDPVSIERLKEQIAWIDKQLTSDTSKQVESSILTEHKKKEREAAKRGKQPFYLKKSD IKKQRLVDKYKELEANGKLKSFIEKKRKKNAAKDHRFMPYRRPASDEQQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12650			unknown protein		Lus10020336 [exp]	0	1
AT5G58920			unknown protein		Lus10040699 [exp]	3.7	0.8268
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008023 [exp]	7.1	0.8168
AT5G64180			unknown protein		Lus10013157 [exp]	11.2	0.7994
AT3G61113			Ubiquitin related modifier 1 (...		Lus10036551 [exp]	16.1	0.8155
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	16.9	0.8128
AT3G11591			unknown protein		Lus10016986 [exp]	18.1	0.7856
AT1G55340			Protein of unknown function (D...		Lus10013616 [exp]	32.2	0.7917
AT1G03650			Acyl-CoA N-acyltransferases (N...		Lus10025567 [exp]	33.3	0.7384
AT3G29130			unknown protein		Lus10038450 [exp]	45.4	0.7099
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	50.5	0.7736

Compare expression of checked genes

Lus10020336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.