Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17900 260 / 3e-87 PLATZ transcription factor family protein (.1.2) AT1G32700 250 / 1e-83 PLATZ transcription factor family protein (.1.2) AT1G21000 201 / 5e-64 PLATZ transcription factor family protein (.1.2) AT1G76590 199 / 2e-63 PLATZ transcription factor family protein (.1) AT5G46710 193 / 3e-61 PLATZ transcription factor family protein (.1) AT1G43000 189 / 8e-60 PLATZ transcription factor family protein (.1) AT2G27930 157 / 2e-47 PLATZ transcription factor family protein (.1) AT2G12646 134 / 1e-37 PLATZ transcription factor family protein (.1) AT3G60670 124 / 3e-34 PLATZ transcription factor family protein (.1) AT1G31040 123 / 1e-33 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030968 [exp] 258 / 2e-86 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10000482 [exp] 250 / 4e-83 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 249 / 9e-83 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10004577 [exp] 234 / 4e-77 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2) Lus10000952 [exp] 207 / 3e-66 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10002700 [exp] 208 / 4e-66 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 198 / 3e-63 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10040292 [exp] 195 / 1e-61 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2) Lus10035554 [exp] 191 / 3e-60 AT1G21000 221 / 4e-73 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G051200 [exp] 293 / 3e-100 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 283 / 4e-96 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 269 / 5e-91 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 268 / 1e-90 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 224 / 7e-73 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.005G259000 [exp] 222 / 3e-72 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.016G097100 [exp] 205 / 5e-66 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 201 / 2e-64 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 187 / 4e-59 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.001G212400 [exp] 187 / 5e-59 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10020337 pacid=23144089 polypeptide=Lus10020337 locus=Lus10020337.g ID=Lus10020337.BGIv1.0 annot-version=v1.0 ATGATGATTCTCCACCAAACCGCTGCCGAGCCTCGAGCTACTCCTCCAGCAGCAGCAGCCGCCGTCACTCCTGCTCCAGCCGTCAGAGAAATCAAGCCTG CAAATATGAGCAGGAGAATCATGGTGTTTGATGAAATGCCTGAACAGGGAGGAGGAGGTCCAGAGATGATGACGAATCACGAGCATAACAATGGTGTTAG TAAGTGGCCGGATTGGCTCCTTCCGCTTCTCAACACAACCTTCTTCGGCCACTGCAAGCTCCACGCTGAAGCTCACAAGAGTGAATGTAACATGTACTGC TTGGACTGTATGAATGGCGCTCTCTGTTCTCTTTGCCTCTCTTACCACCGTGACCACCGATTCATTCAGATAAGAAGGTCGTCATACCACGATGTGATAA GGGTGTCGGAGATACAGAAGTACATGGATATAGGAGGAGTTCAGACGTATGTGATCAACAGCGCTAAGATTGTGTTCTTGAATGAAAGGCCGCAGCCTAG GCCTGGTAAAGGTGTCACCAATACTTGCAATGTCTGTGACCGTAGCCTCATGGATTCCTTCACCTTCTGCTCCCTTGGTTGCAAGGTTGTGGGGACTTCA AAGAACTTCGTGATGAACAAGAGGAAGAAAAGTAAGACGACTTTTAAGAGGACAATAAGCAACAAGAAGGAGGAGATTGTTGGGTCATCCGACACAGAAG AGTCGATGATAGCCACCATCGAAACGCAGCGTTTTATCACACCGTTGACTCCACCACCATCATCAAGCTCATCATCAGTCAACTACAGGTCTGCAAAGAG GAGGAAAGGTATCCCACATAGGTCTCCAATGGGGAATTCTATCATAACTTACTGA
AA sequence Show only first row Show all	>Lus10020337 pacid=23144089 polypeptide=Lus10020337 locus=Lus10020337.g ID=Lus10020337.BGIv1.0 annot-version=v1.0 MMILHQTAAEPRATPPAAAAAVTPAPAVREIKPANMSRRIMVFDEMPEQGGGGPEMMTNHEHNNGVSKWPDWLLPLLNTTFFGHCKLHAEAHKSECNMYC LDCMNGALCSLCLSYHRDHRFIQIRRSSYHDVIRVSEIQKYMDIGGVQTYVINSAKIVFLNERPQPRPGKGVTNTCNVCDRSLMDSFTFCSLGCKVVGTS KNFVMNKRKKSKTTFKRTISNKKEEIVGSSDTEESMIATIETQRFITPLTPPPSSSSSSVNYRSAKRRKGIPHRSPMGNSIITY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17900			PLATZ transcription factor fam...		Lus10020337 [exp]	0	1
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	2.4	0.8376
AT1G01770			unknown protein		Lus10014782 [exp]	2.8	0.8255
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	4.9	0.8123
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10039872 [exp]	5.8	0.7485
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	8.4	0.7944
AT1G13990			unknown protein		Lus10037142 [exp]	9.7	0.8059
AT3G03440			ARM repeat superfamily protein...		Lus10017635 [exp]	13.7	0.7391
AT5G56660		ILL2	IAA-leucine resistant (ILR)-li...		Lus10029200 [exp]	14.9	0.6721
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10014948 [exp]	16.5	0.7899
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	21.2	0.7585

Compare expression of checked genes

Lus10020337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.