Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08700 458 / 1e-159 PS1 Presenilin-1 (.1) AT2G29900 301 / 6e-99 PS2 Presenilin-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009518 [exp] 587 / 0 AT1G08700 538 / 0.0 Presenilin-1 (.1) Lus10031966 [exp] 308 / 2e-101 AT2G29900 471 / 3e-166 Presenilin-2 (.1) Lus10035137 [exp] 277 / 6e-91 AT2G29900 410 / 1e-143 Presenilin-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067700 [exp] 492 / 4e-173 AT1G08700 494 / 1e-173 Presenilin-1 (.1) Potri.015G058301 [exp] 327 / 3e-108 AT2G29900 431 / 1e-149 Presenilin-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF01080 [flax] [poplar] Presenilin Presenilin
Representative CDS sequence Show only first row Show all	>Lus10020339 pacid=23144073 polypeptide=Lus10020339 locus=Lus10020339.g ID=Lus10020339.BGIv1.0 annot-version=v1.0 ATGGAGTCCAGCATATTGGAGTCGATCGGAGTGGAGATCATCGGAGTGATGTCCCCGGTCTCGATCTGCATGCTCCTCGTAGTCCTGATCGTCTACTCCC TCTCGCCGGCGGACCCTCTCTCCGCCGCCGCCTCTCCGCCCCTACGCACCGCCGCGAACCTCGTCTACCTCGAGTCCTCCTCCGACTCCACCGCTCAGAA GCTCGAAGGATCCTTGCTCAACGCGCTCGTCTTCGTCGCTATCCTCGCCTTCGTCACTTTCCTCCTCCTCCTCCTCTACTACTACGACTGCACCTGCTTC CTCAAGAACTACATGCGCTTCTCCGCCTTCTTCGTCCTCGGAAGCATGGGAGGATCGATTTTCCTGTCAATAATCCAGCATTTCTCGATCCCCGTAGATT CAATCACATGCTTTCTTTTGCTGTTCAACTTCACAGTAATAGGTACATTGTCAGTTTTCTCAGTTGGGATACCGATTTTCCTGAGGCAAGCCTACATGGT TTCGATGGGGATATTCGTGGCAGCTTGGTTTACGAAGTTGCCTGAATGGAGTACTTGGGTTCTGCTAGTGGCATTAGCACTCTACGACGTGATTGCAGTT CTAGCACCCGGCGGACCGCTTAAAATGCTGGTCGAGTTGTCTCAAAGCAGGGAAGAAGAGCTACCGGCTTTGGTATATGAAGCACGCCCGACTGTTTCAC CCGATCCGCGAAATCGTGGGCGGAGCTTGGAGCTTCTGTTCGGCATGGCTTTCGAATCGGGATCAGGTAGTCTCGAAATGGGTTCCATGCATTCAAGCAA TGAAGAAACTTTACAAGATAGAGATGAAGTTGAGAGGTCTCCATTGGTGGGGAGTCGTTTCAAGGGGAGGCAATCTTCGAGCACTGGATCGGAATACTCG GTGATTGTTGGTAGTAGTAATCGCGACTCTTCTTCTGCTGCGGAGGAAGAGAGGTCCCCTCTGTTTGACTCTCGGAGAGGTTCACACGAGAGCAATGATG ATGATTCTGATTCCGGTTTTACGAGTACAGGGGTTAAACTAGGTCTAGGAGACTTCATTTTCTACAGTGTCCTAGTTGGCAGGGCTGCAATGTACGATCT GATGACAGTGTACGCATGCTACCTGGCGATTATTTCAGGGCTTGGCTGCACTCTGATTCTGCTATCGATCGGTCGTCGAGCTCTACCAGCTCTCCCAATC TCGATAGCATTGGGTGTCGTCTTCTATTTCTTGACGCGGCTGTTAATGGAGCCATTTATCGTCGGGACTTCGACGAATCTGTTGATGTTCTGA
AA sequence Show only first row Show all	>Lus10020339 pacid=23144073 polypeptide=Lus10020339 locus=Lus10020339.g ID=Lus10020339.BGIv1.0 annot-version=v1.0 MESSILESIGVEIIGVMSPVSICMLLVVLIVYSLSPADPLSAAASPPLRTAANLVYLESSSDSTAQKLEGSLLNALVFVAILAFVTFLLLLLYYYDCTCF LKNYMRFSAFFVLGSMGGSIFLSIIQHFSIPVDSITCFLLLFNFTVIGTLSVFSVGIPIFLRQAYMVSMGIFVAAWFTKLPEWSTWVLLVALALYDVIAV LAPGGPLKMLVELSQSREEELPALVYEARPTVSPDPRNRGRSLELLFGMAFESGSGSLEMGSMHSSNEETLQDRDEVERSPLVGSRFKGRQSSSTGSEYS VIVGSSNRDSSSAAEEERSPLFDSRRGSHESNDDDSDSGFTSTGVKLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSIGRRALPALPI SIALGVVFYFLTRLLMEPFIVGTSTNLLMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08700		PS1	Presenilin-1 (.1)		Lus10020339 [exp]	0	1
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10013373 [exp]	1.4	0.9043
AT4G02040			unknown protein		Lus10019069 [exp]	3.5	0.8821
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	5.5	0.8948
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	7.2	0.9009
AT1G61040		VIP5	vernalization independence 5, ...		Lus10011205 [exp]	8.0	0.8539
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	8.1	0.8843
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10028700 [exp]	9.5	0.8555
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	10.8	0.8912
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	11.8	0.8493
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Lus10031334 [exp]	12.0	0.8782

Compare expression of checked genes

Lus10020339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.