Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08710 202 / 3e-64 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009519 [exp] 357 / 3e-124 AT1G08710 253 / 3e-83 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067600 [exp] 233 / 1e-76 AT1G08710 230 / 1e-75 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020340 pacid=23144164 polypeptide=Lus10020340 locus=Lus10020340.g ID=Lus10020340.BGIv1.0 annot-version=v1.0 ATGGCAGCTGCTTTACCAGACCAACTATGGCGGCAGATCCTGGAAACCGGTGCACGAAACTCCACCCTCACTTACAAGGACTTGTGCCGCCTTGCCATCT CCTGCAGCCGCCTCCACGGATTGTCCGACGACCACTCAATCTGGTCCGTCGTCCTCGCTTCCGATTTCCCTGCGCAAAATCCTACTTCATCATCCGCAAA ATCAACTTACAGAATCAGTTTTGAGAAGGAGAGGGATAGGAAGATGGCGGCTCACAGGAGGGCGGTGCTTAGGAGGGAAAGCCAAGTTAGTAACCGTCGA AGAAGGTTAAGGGAAATCGAGGATCGGTTATGTCGTGAGAGCGAGAAATTGAGAGGAGCTGCTATGGAGTTGTCCGATTTGCATAAGGTCAGGCAAGCTT CAGTGGCGTTGAATGTGTGGCAGCCACAGGCAGGGAAGGGAAGACAGAAGCAAGTAGTGGAGCAGTGTTCTGTTCCTGTTGAATCTCGGCTTCATTCTCT TGAAATGGAGATCAAGCTCTGCAAGCAGCAGATTTCGGGGTTTAAAAAGACCTACAGAGATGAGAAACTCAGGCTTCAAGCAGCAGAAAAGGAGCTGGAA TCAATGAAATATCACCCGTTACAAGATGTTCACTGCTCAGCTGGCGTCCTGAATGGCAGAGCGGACTATCATGAGAAGTTCGTGCCGAAATTTGGTGTCG AGGATCCTATGGCTCCTCTTTACCTAACGAACTCATCGACCCCAAGGGAACTTCTCGTTGATTATGATCTGAAGGTGGGTTGGTTGACGATAGCTAAGAT CACGAACGGTTATGATGCATTCACTACTGAAGCATGA
AA sequence Show only first row Show all	>Lus10020340 pacid=23144164 polypeptide=Lus10020340 locus=Lus10020340.g ID=Lus10020340.BGIv1.0 annot-version=v1.0 MAAALPDQLWRQILETGARNSTLTYKDLCRLAISCSRLHGLSDDHSIWSVVLASDFPAQNPTSSSAKSTYRISFEKERDRKMAAHRRAVLRRESQVSNRR RRLREIEDRLCRESEKLRGAAMELSDLHKVRQASVALNVWQPQAGKGRQKQVVEQCSVPVESRLHSLEMEIKLCKQQISGFKKTYRDEKLRLQAAEKELE SMKYHPLQDVHCSAGVLNGRADYHEKFVPKFGVEDPMAPLYLTNSSTPRELLVDYDLKVGWLTIAKITNGYDAFTTEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08710			F-box family protein (.1.2)		Lus10020340 [exp]	0	1
AT4G10950			SGNH hydrolase-type esterase s...		Lus10026771 [exp]	2.4	0.6091
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008404 [exp]	2.8	0.6146
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008403 [exp]	12.8	0.6363
AT2G18460		LCV3	like COV 3 (.1)		Lus10014314 [exp]	13.9	0.5710
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10020257 [exp]	20.3	0.6275
AT5G06440			unknown protein		Lus10029362 [exp]	28.1	0.6041
					Lus10019266 [exp]	34.1	0.5931
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	37.1	0.5991
					Lus10029487 [exp]	38.0	0.5905
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10006817 [exp]	53.2	0.5144

Compare expression of checked genes

Lus10020340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.